PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020685416.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 619aa MW: 69428 Da PI: 6.7472

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020685416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	103	2.3e-32	473	557	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r+e++ ++++ lk+plWeevs++m+ g+ rs+k+Ckekwen+nk+++k ke+ +kr s++s+tcpyf+ql+ XP_020685416.1 473 RWPKIEVQALIQVRSELDGQFQEPGLKGPLWEEVSAAMATMGYLRSAKRCKEKWENINKYFRKSKESGRKR-SQHSKTCPYFHQLD 557 8*******************************************************************8.89999******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence
MQSGFGGVSE MQQFMVDGSA HPFFSISSTT PPPPNADVIA AATAGGHEIY HPAAIAPTNK 60 LFNTFYRHPG QYSQQSPPPL PHFPHFHSNI PITQQLFTPP PQPHDHHHHH HFQLFQANHH 120 NHRRLIPNSP SLDHDTNPEN SVSGPLLHGD GGPPTPFLPA DMKFKLSVDD SSGGGSRHTF 180 NNDNDVPSSI LHGENASESR LRSWNREDCT IKEPFWRPLD LDYINSNNKR CKEKESAELH 240 FAKRSRVTEE LENSHPGNNY KLFSELEAIY KPGGSNSTAT EPVNINQTTT HAANQTTGSG 300 SALTGDDHPL IPPVTTAAFG LDYRLEDDNS TGGEAHTNLK KAQHHSRRRR RRRRLKIKSI 360 AAFFEGLLKQ LMDHQEALHK KFLNAMELRD KERIGQEEVR REQEAARARR EAVARAHDRE 420 LAAAREAAIL SFLEKITGEN INLPPFPISS ADKTDVVAKA GDLIPSTMLT TSRWPKIEVQ 480 ALIQVRSELD GQFQEPGLKG PLWEEVSAAM ATMGYLRSAK RCKEKWENIN KYFRKSKESG 540 RKRSQHSKTC PYFHQLDQLY SKETGRKVKN SELLDAVVVS GAGEEVGDSE GRRTAVDEEE 600 QEEDDDVDDE SSQFIEQLQ

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence

MQSGFGGVSE MQQFMVDGSA HPFFSISSTT PPPPNADVIA AATAGGHEIY HPAAIAPTNK  60
LFNTFYRHPG QYSQQSPPPL PHFPHFHSNI PITQQLFTPP PQPHDHHHHH HFQLFQANHH  120
NHRRLIPNSP SLDHDTNPEN SVSGPLLHGD GGPPTPFLPA DMKFKLSVDD SSGGGSRHTF  180
NNDNDVPSSI LHGENASESR LRSWNREDCT IKEPFWRPLD LDYINSNNKR CKEKESAELH  240
FAKRSRVTEE LENSHPGNNY KLFSELEAIY KPGGSNSTAT EPVNINQTTT HAANQTTGSG  300
SALTGDDHPL IPPVTTAAFG LDYRLEDDNS TGGEAHTNLK KAQHHSRRRR RRRRLKIKSI  360
AAFFEGLLKQ LMDHQEALHK KFLNAMELRD KERIGQEEVR REQEAARARR EAVARAHDRE  420
LAAAREAAIL SFLEKITGEN INLPPFPISS ADKTDVVAKA GDLIPSTMLT TSRWPKIEVQ  480
ALIQVRSELD GQFQEPGLKG PLWEEVSAAM ATMGYLRSAK RCKEKWENIN KYFRKSKESG  540
RKRSQHSKTC PYFHQLDQLY SKETGRKVKN SELLDAVVVS GAGEEVGDSE GRRTAVDEEE  600
QEEDDDVDDE SSQFIEQLQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	347	352	RRRRRR
2	347	353	RRRRRRR
3	347	354	RRRRRRRR
4	348	353	RRRRRR
5	348	354	RRRRRRR
6	348	355	RRRRRRRR
7	349	354	RRRRRR
8	388	393	LRDKER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	6e-43	Trihelix family protein