PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020685442.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 311aa MW: 36317.7 Da PI: 7.1399

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020685442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.7	4.1e-25	56	137	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W +qe+++Li++r ++e+++ ++++k+ We+v+ +mre+g++r+++qCk+kw+nl +ryk ++ + + s ++cp+f++l+ XP_020685442.1 56 QWGQQETRELIAIRADLERDFTVSRRNKTVWEAVALRMREKGYRRTSEQCKCKWKNLVNRYKGKETADAE----SGRQCPFFEELH 137 7***********************************************************99888886....4678****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MMMGGGGEGD ALGGRMGMVS TFHLQMMPAA GELVGTSGGG GLGGGGQRGK EEKVPQWGQQ 60 ETRELIAIRA DLERDFTVSR RNKTVWEAVA LRMREKGYRR TSEQCKCKWK NLVNRYKGKE 120 TADAESGRQC PFFEELHALF TERARNMQRL LLESESGALH SKKKLKRLSA DRSSDEFSDD 180 DEEDEEDSEE EKLTRSKKKK AERTTLQQQT RTAPDKSRPA NSIHDLLHEF LQQQQQLEAH 240 WWEIMDRRAQ ERQRFDQEWR NTMEKLERER LMLEQTWRDR EEQRRMREES RAEKRDALLT 300 TLLNKLIQDD L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	200	KKLKRLSADRSSDEFSDDDEEDEEDSEEEKLTRSKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	7e-30	Trihelix family protein