PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020685457.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARF
Protein Properties Length: 981aa    MW: 109607 Da    PI: 4.906
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020685457.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.5e-22123224199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k lt sd++++g +++p++ ae+        + ++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F   +++
  XP_020685457.1 123 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldytM-QPPN-QELIVRDLQDNIWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKSGDSVLFI--RDE 213
                     89*********************999*****954.5444.49************************************************..456 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_020685457.1 214 KSQLLLGLRRS 224
                     66679999886 PP
2Auxin_resp115.16.2e-38249331183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPra++seF+v+++k++ka + +vs+GmRf m+f te+s +rr++Gt+vg+sdld++rWpnSkWr+L+
  XP_020685457.1 249 AAHAAASSSPFTVYYNPRACPSEFIVPLAKYQKAAYAQVSIGMRFGMMFATEESTKRRCMGTIVGISDLDSLRWPNSKWRNLQ 331
                     79*******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 981 aa     Download sequence    
MKLLGEVQAN AGAKKILNSE LWHACAGPLV SLPQPGSLVY YFPQGHSEQV STSTRRAINS  60
QIPSYTNLPS QLMCQVHNVT LHADRENDEI YAQMTLQPVN SEADVFQIPD FGYTKSKQPT  120
EFFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYTMQPPN QELIVRDLQD NIWTFRHIYR  180
GQPKRHLLTT GWSLFVGAKR LKSGDSVLFI RDEKSQLLLG LRRSNCQQSP LPSSVLSADS  240
MHIGVLAAAA HAAASSSPFT VYYNPRACPS EFIVPLAKYQ KAAYAQVSIG MRFGMMFATE  300
ESTKRRCMGT IVGISDLDSL RWPNSKWRNL QVEWDEPGYD EKPDRVSIWE IETPESLFVF  360
PPSLKRHCIP GLLGIDIGAG NVNHFLQASD YRSGDLHTLR SKLNSERLMK KVIRQQSSLP  420
GSEIGCHQSV FATILQKIKA SGFPATSSST LPTLMATQGA SSYEEVMIRT AMREQNASPG  480
PQEQILPLDN NNTSAENQNI YYCLEQEGLL MATKLVNQFS TETPWRNCQE LTEHDNKCED  540
VAVEAKTDMK SELFYNEAKN EKIESAQNTV RSTSNMNQLT GNYERFSPVT HLGNEINKNE  600
NLGNSFVSEN KEVQANRLDD PQIYQQQLEP STGEAANPLN KNLPYHGSQL YQCSDNDELI  660
LQQSLYQSFA PNSLINSSRP DNLFLSAVES VESPSVGISS ILNLESLNPF EKSQFSSFSD  720
TFSPSFMPIF TEEAYGYREI NPSEAIPVSG ILPFHAHNLK TGMKENDSPE LLKLCGLRDL  780
SSEGTCSNLH SESSNADIFT DSSVPSTVLE EFSVVKGSSF PVTLEDSLGC FAMNQDIQSQ  840
LTSTSLPEFS LQDIPECSAG DDYNYLGNHA MKQAVQQPMR TYTKVQKLGS VGRSIDLKRF  900
RNYEQLKSAI VCMFGLEGQL DDPNQSEWKL VYVDQENDVL LVGDDPWDEF VNCVRCIRIL  960
SPSEVQQMSQ EGLQFMNSYI P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein