PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020685554.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 496aa MW: 53461.5 Da PI: 5.5572

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020685554.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.3e-11	319	364	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka++L + ++Y+k Lq XP_020685554.1 319 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 364 99*********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MPERDAMESF LSTFLSSSWS DVNESANRSW GGTIASQTEN LLADSMESFQ ADGKKSAMPI 60 IPSGHIIAAE DLSIAHENTS SFFSDGSVKF GIGKGLYLGE NLSQSQQASH NSQPSHCIEA 120 SEGRFSIPDT VTCNSTGITY GLELNSSLPH SALTISSSLE NSGSEPPTFG RSIGEAHSIS 180 SVPTIWPSYS GISSLSGQQK VENFSFQGIT NGVDLLRNSQ NELCSNLVTF ASGQHMKMTR 240 GTTEATSLQL PSFSGGSQMS FSKTTGMHTN PQPEGTTLQH QLGHSSNSHQ HMTQSNAVCC 300 NVTAKPRVRA RRGQATDPHS IAERLRREKI AERMKNLQEL VPNSNKTDKA SMLDEIIDYV 360 KFLQLQVKVL SMSRLGAAGA VVPLITDVQA EETGSLHLST INQGVDILES QDNLAFEQEV 420 VKLMESSVTT AMQYLQNKGL CLMPIALATA ISNQKGSIAS TPSDRREPDD HENEANCFPG 480 VIAKQEEVTK PMGNGR

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MPERDAMESF LSTFLSSSWS DVNESANRSW GGTIASQTEN LLADSMESFQ ADGKKSAMPI  60
IPSGHIIAAE DLSIAHENTS SFFSDGSVKF GIGKGLYLGE NLSQSQQASH NSQPSHCIEA  120
SEGRFSIPDT VTCNSTGITY GLELNSSLPH SALTISSSLE NSGSEPPTFG RSIGEAHSIS  180
SVPTIWPSYS GISSLSGQQK VENFSFQGIT NGVDLLRNSQ NELCSNLVTF ASGQHMKMTR  240
GTTEATSLQL PSFSGGSQMS FSKTTGMHTN PQPEGTTLQH QLGHSSNSHQ HMTQSNAVCC  300
NVTAKPRVRA RRGQATDPHS IAERLRREKI AERMKNLQEL VPNSNKTDKA SMLDEIIDYV  360
KFLQLQVKVL SMSRLGAAGA VVPLITDVQA EETGSLHLST INQGVDILES QDNLAFEQEV  420
VKLMESSVTT AMQYLQNKGL CLMPIALATA ISNQKGSIAS TPSDRREPDD HENEANCFPG  480
VIAKQEEVTK PMGNGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	4e-63	bHLH family protein