PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020685655.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 382aa MW: 41883.1 Da PI: 8.2368

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020685655.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.1	8e-28	215	265	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r++W+peLH+rFv+a++ LGGs++AtPk+i+elm+v+gLt+++vkSHLQ XP_020685655.1 215 KARRCWSPELHRRFVNALHILGGSQVATPKQIRELMNVDGLTNDEVKSHLQ 265 68************************************************* PP
2	Myb_DNA-binding	38.9	2e-12	217	266	1	46
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqk 46 r W++e++ ++v+a + lGg t+k I + m+ g+t ++ks++q XP_020685655.1 217 RRCWSPELHRRFVNALHILGGSqvaTPKQIRELMNvDGLTNDEVKSHLQV 266 568***************99************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MASSSSSELI SLDYKLISSY SINQNQNPIA DHMHKLQDFL ARLEEESLKI EAFKRELPLC 60 MQLLNNAMEA YRKQLETYQA SQEAQPVLEE FIPLKKTSVE ESEMANWMVS AQLWSSPAAD 120 EADSAKQGEE EHSLVTFSSK LVLDAKPRIG GAFQPFSKQK KKDISELALA RSIQKEMEEK 180 ESCSKSNEGE EKQGKREGSC SVSSDVVAPA ATQRKARRCW SPELHRRFVN ALHILGGSQV 240 ATPKQIRELM NVDGLTNDEV KSHLQVLSLS LSSDGAATCS PRRHLGPTRV RHVSSSSSFG 300 RGSGDHTLWR QPLAGALLPS AAALPPLAVA IGRRRPSGFG LQESARFFGV GEHRGGGGGD 360 DQRSGSGGRR RSGEILREWG SL

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MASSSSSELI SLDYKLISSY SINQNQNPIA DHMHKLQDFL ARLEEESLKI EAFKRELPLC  60
MQLLNNAMEA YRKQLETYQA SQEAQPVLEE FIPLKKTSVE ESEMANWMVS AQLWSSPAAD  120
EADSAKQGEE EHSLVTFSSK LVLDAKPRIG GAFQPFSKQK KKDISELALA RSIQKEMEEK  180
ESCSKSNEGE EKQGKREGSC SVSSDVVAPA ATQRKARRCW SPELHRRFVN ALHILGGSQV  240
ATPKQIRELM NVDGLTNDEV KSHLQVLSLS LSSDGAATCS PRRHLGPTRV RHVSSSSSFG  300
RGSGDHTLWR QPLAGALLPS AAALPPLAVA IGRRRPSGFG LQESARFFGV GEHRGGGGGD  360
DQRSGSGGRR RSGEILREWG SL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-63	G2-like family protein