PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020685710.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-YC

Protein Properties

Length: 258aa MW: 29610.2 Da PI: 6.5197

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020685710.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58	2.1e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rik+i+++dedv +i+ +P l+ska elf+ +l r+++ + + +t+ s ++++v + +fdfl ++v r XP_020685710.1 6 DTRFPASRIKRIMQTDEDVGKIALAVPLLVSKALELFLQDLCDRTYNVTLKRGAKTMCSSHLKQCVHNFSVFDFLKETVNR 86 5789************************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MRKKLDTRFP ASRIKRIMQT DEDVGKIALA VPLLVSKALE LFLQDLCDRT YNVTLKRGAK 60 TMCSSHLKQC VHNFSVFDFL KETVNRVPDV GCSVVVGEDR SSKRRKAVDD ESNVIDEESK 120 RSKREPVHDS RGRGRGRGRG RGRGRRRGSH ETEWDFSHYN KYEGGPETSP QHHHKLEQGE 180 NDFNKTELKE IDMTGTPVPV RDFDLNIDLD ENGLAMTNPV LAWPPFTYIN KVTIDPLQLA 240 LIDKRIDEEE DYDNEDDI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	140	RGRGRGRGRG
2	131	141	RGRGRGRGRGR
3	133	142	RGRGRGRGRG
4	133	143	RGRGRGRGRGR
5	135	144	RGRGRGRGRG
6	135	145	RGRGRGRGRGR
7	137	147	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-56	NF-YC family protein