PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020685719.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 353aa    MW: 39455.1 Da    PI: 10.1
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020685719.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-09169214145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 
                      r++WTt+E+  l+ avk++G g+W  I +    + Rt  q+  rw+
   XP_020685719.1 169 RNSWTTQEENDLIAAVKKHGEGNWLNILKDDFkQDRTTSQLSKRWN 214
                      789**********************999864447899999988886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MLFYRYNLTI IITILKEISE ITDVKIDWKT LVKRSSTGIS NAREYQMLWR HLAYREPLFE  60
NLVETEPEED DSDLEFELEA VPSASAEASL QANKCIEVIM PSSMIPDAPM SDFHFRKESH  120
SKKAVHPSTV KNTILLNSVA KKQTLMPAYT GTLQGNEIAY PAFSNKRKRN SWTTQEENDL  180
IAAVKKHGEG NWLNILKDDF KQDRTTSQLS KRWNIIKKRL TSSNLASNDK INDWVLHNEQ  240
LATRKAISMA LNIPTIGSLS KLLSDARPDY SLEASKKLQQ PASPQKTMKK SAIASSLVTP  300
DPLIQAAAVA AGGRIIDPSA AASFLKATNS KNIHRIKNGD ISVSKFKRSS GAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.21e-35MYB_related family protein