PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020685794.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 1015aa MW: 113698 Da PI: 5.0766

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020685794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	58.3	2.6e-18	21	159	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkya..tgkrknr..atksgyWk 84 lp+G++F+P+deel+++ L++ +g ++++ + ++e ++ +v P+ Lp vk++ + yfF+++ + ++ + kr+++ + W+ XP_020685794.1 21 LPKGVKFDPSDEELLWHLLAEMGKGVAkrhpfINEFIFsLDEDaGLGHVLPQFLP-GVKQDGSASYFFHRKIEMHRsrNFKRQKKqdNSVEICWN 114 799**********99999876655444456333333344443899****.677888999*99887733233444412344677 PP NAM 85 atgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + gk++ v++ +g + g k++L +y + + ++ kt W+mh+y + XP_020685794.1 115 SIGKSNLVCV-DGIHQGSKEVLSLYMNtvTGGNPLKTPWLMHQYCI 159 ****9999.999*******6522555566*******75 PP

Sequence ? help Back to Top
Protein Sequence Length: 1015 aa Download sequence
MDRQVLQACS FCNFYPEWPS LPKGVKFDPS DEELLWHLLA EMGKGVAKRH PFINEFIFSL 60 DEDAGLGHVL PQFLPGVKQD GSASYFFHRK IEMHRSRNFK RQKKQDNSVE ICWNSIGKSN 120 LVCVDGIHQG SKEVLSLYMN TVTGGNPLKT PWLMHQYCIG INETEEDLVV SKIFYEISSN 180 QDIQDSRTDS VHGLVAAVVG VADSLQVAPE FHERLHADSV SADASSQAVE LGIGGETNIK 240 VVDYLKSASC QKPPIKYLEK AKTNLDKNSD GTLATDELAL LESACETAAE ISIFCTSAKS 300 EIRDEDQECV VEKRADDFQS NLGDCGNWIN NYNYNEVIDD TCDSNDTQVS MEKSCPKIVP 360 EHDLQKNISD KMFRTQGRFI PTKSREFNTT GIYSFAGHIS RERHETYSKC LDEAHVSPNS 420 IPSAEHNITH ENSINSLFIL GLPAYSLKGK PSKETEPIIS FENNSNNWVN ISAQSALPIK 480 IEPKSFVDTE IDIASEKFSS NRLNVSAPSV MIIKVKNEPF EEVEASNVLE KYVEKHSSFS 540 QLSCPEEGAP SCNLSHLTYV PKDPRIPSAE ILNTMISGLD KLLSETTGLM NHHHEEDDNV 600 HDGLLMSNDN SQVIGDTECF NQSSYAQINV HTGEPQSNSV STSSSLNVKS EPVESSLLSC 660 SQIPPCNTRG HVLLTFENKK ELCSDFQPDV LDHVPLKLRL GISVSEDDVN VKNGNISEEI 720 APVTPACRSF GSVNTKECLS SSRRKRKRKK IATDSVEKAM EEDAPGLLKV LLDRGIQVEE 780 IKLYGDLEDN DPLETSSSEG GFEELETVMT KLFSERSSLL RFASGRPVKG ARAVYCLAGL 840 ISLIEQARYL RFRQIPIDWG WCRPLQSFIF VFQTHNRIVL ERPEYGYATY FFELVDSLPI 900 DWQIRRLVMA MKLTNFSRTI LLENKPLIVG EDLSEGEALV LEAYGWARNT GFGTLLNYRD 960 RVVHDRRNVI LSEWRAKIGK LLMNGYTGGR MVLANFPKKV VEYLGNLSSE IKMEL

Sequence ? help Back to Top

Protein Sequence Length: 1015 aa Download sequence

MDRQVLQACS FCNFYPEWPS LPKGVKFDPS DEELLWHLLA EMGKGVAKRH PFINEFIFSL  60
DEDAGLGHVL PQFLPGVKQD GSASYFFHRK IEMHRSRNFK RQKKQDNSVE ICWNSIGKSN  120
LVCVDGIHQG SKEVLSLYMN TVTGGNPLKT PWLMHQYCIG INETEEDLVV SKIFYEISSN  180
QDIQDSRTDS VHGLVAAVVG VADSLQVAPE FHERLHADSV SADASSQAVE LGIGGETNIK  240
VVDYLKSASC QKPPIKYLEK AKTNLDKNSD GTLATDELAL LESACETAAE ISIFCTSAKS  300
EIRDEDQECV VEKRADDFQS NLGDCGNWIN NYNYNEVIDD TCDSNDTQVS MEKSCPKIVP  360
EHDLQKNISD KMFRTQGRFI PTKSREFNTT GIYSFAGHIS RERHETYSKC LDEAHVSPNS  420
IPSAEHNITH ENSINSLFIL GLPAYSLKGK PSKETEPIIS FENNSNNWVN ISAQSALPIK  480
IEPKSFVDTE IDIASEKFSS NRLNVSAPSV MIIKVKNEPF EEVEASNVLE KYVEKHSSFS  540
QLSCPEEGAP SCNLSHLTYV PKDPRIPSAE ILNTMISGLD KLLSETTGLM NHHHEEDDNV  600
HDGLLMSNDN SQVIGDTECF NQSSYAQINV HTGEPQSNSV STSSSLNVKS EPVESSLLSC  660
SQIPPCNTRG HVLLTFENKK ELCSDFQPDV LDHVPLKLRL GISVSEDDVN VKNGNISEEI  720
APVTPACRSF GSVNTKECLS SSRRKRKRKK IATDSVEKAM EEDAPGLLKV LLDRGIQVEE  780
IKLYGDLEDN DPLETSSSEG GFEELETVMT KLFSERSSLL RFASGRPVKG ARAVYCLAGL  840
ISLIEQARYL RFRQIPIDWG WCRPLQSFIF VFQTHNRIVL ERPEYGYATY FFELVDSLPI  900
DWQIRRLVMA MKLTNFSRTI LLENKPLIVG EDLSEGEALV LEAYGWARNT GFGTLLNYRD  960
RVVHDRRNVI LSEWRAKIGK LLMNGYTGGR MVLANFPKKV VEYLGNLSSE IKMEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	743	748	RRKRKR
2	743	749	RRKRKRK
3	744	749	RKRKRK
4	744	750	RRKRKRK
5	746	750	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	1e-43	NAC family protein