PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020685801.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CO-like

Protein Properties

Length: 366aa MW: 40652.7 Da PI: 7.1462

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020685801.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.6	5.3e-08	20	62	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +r C+ + + +++++C ++ +lC+ C ++ H+ H++ XP_020685801.1 20 ARACDGCLRRRARWYCGADDAFLCQACDSSVHSAnslarrHQR 62 678*****************************65677777765 PP
2	CCT	68.9	1.3e-23	308	351	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_020685801.1 308 REARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 351 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MDERDRKHRS AANAVGGSTA RACDGCLRRR ARWYCGADDA FLCQACDSSV HSANSLARRH 60 QRLRLHTASF SSSPSPSPSP TPPPISWRKR KARTPRGHHQ PKSVKPEPLV PDLEKEDEEL 120 EMQLMCCVPV LDPLFNDFSS ASLEAKPISG YGLDAGPGGP SIEIDMENLD VECLLGVGLD 180 DVHESSLYID GFTAVDEEDL SRIKMEFEYD AMGDEMELCH EAQGVVVAVE ERKERELCEG 240 VVKKMGLRLD YDAVIDAWSR SGCSSPWSGG DRPQLDSDGY LPSLTGLSQA GGASWSRGRW 300 AASGGEEREA RVTRYREKRR TRLFSKKIRY EVRKLNAEKR PRMKGRFVKR TTLSAGGPGQ 360 APYGQY

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MDERDRKHRS AANAVGGSTA RACDGCLRRR ARWYCGADDA FLCQACDSSV HSANSLARRH  60
QRLRLHTASF SSSPSPSPSP TPPPISWRKR KARTPRGHHQ PKSVKPEPLV PDLEKEDEEL  120
EMQLMCCVPV LDPLFNDFSS ASLEAKPISG YGLDAGPGGP SIEIDMENLD VECLLGVGLD  180
DVHESSLYID GFTAVDEEDL SRIKMEFEYD AMGDEMELCH EAQGVVVAVE ERKERELCEG  240
VVKKMGLRLD YDAVIDAWSR SGCSSPWSGG DRPQLDSDGY LPSLTGLSQA GGASWSRGRW  300
AASGGEEREA RVTRYREKRR TRLFSKKIRY EVRKLNAEKR PRMKGRFVKR TTLSAGGPGQ  360
APYGQY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	319	335	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-58	CO-like family protein