PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020685848.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 1025aa MW: 113528 Da PI: 7.1569

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020685848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.8	4.1e-40	146	220	2	76
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 Cqve+C adls++k+yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+ XP_020685848.1 146 CQVENCGADLSQTKDYHRRHKVCEMHAKASSAVVGNVIQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKT 220 *************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1025 aa Download sequence
MEANFEGENH QFFAAGSSKR FGKKAQEWDL NDWKWDGDLF MATPVNPGPL KCLNKQLLPD 60 IVLSNSSSSC SDEAEFGVVG KVLGEGDKRR RIVAVEDDEH CDDTRSLTLK LGAHAYPVLE 120 GDLNPGGMKN GKRVLVQATN SNHPKCQVEN CGADLSQTKD YHRRHKVCEM HAKASSAVVG 180 NVIQRFCQQC SRFHLLQEFD EGKRSCRRRL AGHNKRRRKT FSGATTPSES SAAGDQSAGY 240 LLISLLRILA NLNSDRSEQS KDQEFLSNLL RNVASLAGSS DGNNSAGLLQ ASQDLQKAGT 300 SVEAANALIL GAVLPKENKS LSSPPKTVCD HPAATNHCAS PGVALREMHG HQNLSVSSFG 360 TTVQATCSER LVAEKNFLPD KSLTLCSSQH MLPTACTVAG VRKKEFDLNT VYYEGEDSAL 420 GCGQPANQAT LDIGSNNCPS WILQDSHQSS PPQTSGNTDS TSNRSPSSSN GDAQSRTDRI 480 VFKLFGKDPN DFPLVLRAQI FDWLSNSPTD MESYIRPGCI ILTVYLRLEA SMWDELCHDL 540 GSSLKRLLLV ADDDFWKMGW IFARVQHHIA FIYNGQVVLN KSLIMERPTC SKIVSIAPVA 600 VPPSSRVTFK VKGSNLVRSS TRLLCAYEGK YLIQEVNQPK VQCSDNRSNG NRNEQLQSIS 660 VSCHVPDGIG RGFIEIEDNG LSSGFFPFIV AEEDICAEIK MLESSIASYE DLSEEKVETA 720 RTLTMNFLHE MGWLLRRSQL RFSSESENSC LETFSLLRFR WILRFAIDRD WSAVVKKFLD 780 IFFEGNIETD GRSPNEVALS EDLLHYAVQR NSNSTVKLLL RYKPDKNSDG GLYNLFRPDM 840 PGPSGITPLH VAATSSFAEN MLNILTEDPG QFGVKAWTNA RDATGFTPED YARARGHESY 900 ILLMQKKMKK IAEKCDVVVN MPCKLSLPAD AIYTQTQGLK SGKLYSLEID KTKSEQSQPR 960 FCKLCEQHLA CRSSVGRSLL YRPMLLSMVG IAAVCVCVGL LFKGPPEVMF VYPPFRWELL 1020 ETGYI

Sequence ? help Back to Top

Protein Sequence Length: 1025 aa Download sequence

MEANFEGENH QFFAAGSSKR FGKKAQEWDL NDWKWDGDLF MATPVNPGPL KCLNKQLLPD  60
IVLSNSSSSC SDEAEFGVVG KVLGEGDKRR RIVAVEDDEH CDDTRSLTLK LGAHAYPVLE  120
GDLNPGGMKN GKRVLVQATN SNHPKCQVEN CGADLSQTKD YHRRHKVCEM HAKASSAVVG  180
NVIQRFCQQC SRFHLLQEFD EGKRSCRRRL AGHNKRRRKT FSGATTPSES SAAGDQSAGY  240
LLISLLRILA NLNSDRSEQS KDQEFLSNLL RNVASLAGSS DGNNSAGLLQ ASQDLQKAGT  300
SVEAANALIL GAVLPKENKS LSSPPKTVCD HPAATNHCAS PGVALREMHG HQNLSVSSFG  360
TTVQATCSER LVAEKNFLPD KSLTLCSSQH MLPTACTVAG VRKKEFDLNT VYYEGEDSAL  420
GCGQPANQAT LDIGSNNCPS WILQDSHQSS PPQTSGNTDS TSNRSPSSSN GDAQSRTDRI  480
VFKLFGKDPN DFPLVLRAQI FDWLSNSPTD MESYIRPGCI ILTVYLRLEA SMWDELCHDL  540
GSSLKRLLLV ADDDFWKMGW IFARVQHHIA FIYNGQVVLN KSLIMERPTC SKIVSIAPVA  600
VPPSSRVTFK VKGSNLVRSS TRLLCAYEGK YLIQEVNQPK VQCSDNRSNG NRNEQLQSIS  660
VSCHVPDGIG RGFIEIEDNG LSSGFFPFIV AEEDICAEIK MLESSIASYE DLSEEKVETA  720
RTLTMNFLHE MGWLLRRSQL RFSSESENSC LETFSLLRFR WILRFAIDRD WSAVVKKFLD  780
IFFEGNIETD GRSPNEVALS EDLLHYAVQR NSNSTVKLLL RYKPDKNSDG GLYNLFRPDM  840
PGPSGITPLH VAATSSFAEN MLNILTEDPG QFGVKAWTNA RDATGFTPED YARARGHESY  900
ILLMQKKMKK IAEKCDVVVN MPCKLSLPAD AIYTQTQGLK SGKLYSLEID KTKSEQSQPR  960
FCKLCEQHLA CRSSVGRSLL YRPMLLSMVG IAAVCVCVGL LFKGPPEVMF VYPPFRWELL  1020
ETGYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	92	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein