PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020685936.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family Trihelix
Protein Properties Length: 315aa    MW: 36797.2 Da    PI: 7.1234
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020685936.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.81.1e-2657138186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W +qe+++Li++r + e+++   +++k+lWe+vs +mr++g++rsp qCk+kw+nl +ryk +++ge ++     ++cp+f++++
  XP_020685936.1  57 QWGQQETRELIAIRADFEQDFTVVRRNKTLWEAVSLRMRDKGYQRSPDQCKCKWKNLINRYKSTETGEAEN----GRHCPFFEEIH 138
                     7********************************************************************84....668*****997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MMMPGGNGDA LGGRMAVMPL QLKTVAAEMS AMTGRAGNEG GGVGGQRTKE DKVSQSQWGQ  60
QETRELIAIR ADFEQDFTVV RRNKTLWEAV SLRMRDKGYQ RSPDQCKCKW KNLINRYKST  120
ETGEAENGRH CPFFEEIHSV LTEHPSMQRL LLESEAGTPR SKKNPKRLIS ERLYDELSDD  180
DDDEDEESDQ ERPSQGKKRK AEKSVQHQQQ SRAAAAAADK SRAANSVHEL LQDFMQKQQQ  240
IESHWWEMME RRAFERQRFE QEWRQSMEKL ERERLMLERA WREREEQRRV REECRAEKRD  300
ALLTALLNKL IQNDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-28Trihelix family protein