PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020686098.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family RAV
Protein Properties Length: 338aa    MW: 36717.7 Da    PI: 9.8215
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020686098.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.13.9e-1259107155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+ykGV   + +grW A+I++      ++r++lg+f  + eAa a++aa+++++g
  XP_020686098.1  59 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNLEREAACAYDAAAQRFRG 107
                     78****9888.8*********3.....5**********99*************98 PP
2B397.11.1e-30174275195
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k  tpsdv+k++rlv+pk+ ae+h       gg+ +++  l++ed  g++W+++++y+++s++yvltkGW++Fvk++gLk+gD+v F++++  
  XP_020686098.1 174 FDKSVTPSDVGKLNRLVIPKQQAEKHfslpgvvGGEGAKGLLLSFEDGVGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLKAGDTVGFYRSKGG 268
                     899******************************77778999*************************************************98778 PP

                     EE..EEE CS
              B3  89 efelvvk 95 
                     +++l++ 
  XP_020686098.1 269 DGQLYIE 275
                     8877765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MDSSSCIDES SASSDAGAAI LSPSPTPPSP PPPLQRMGSG TSTLTIAESS SESRKLPSSQ  60
YKGVVPQPNG RWGAQIYEKH QRVWLGTFNL EREAACAYDA AAQRFRGRDA ATNFPPLSPD  120
AHELAFLLSR SKAEVVDMLR KHTYLDELHH SRLRLSPPPS FLPSASKPPR EHLFDKSVTP  180
SDVGKLNRLV IPKQQAEKHF SLPGVVGGEG AKGLLLSFED GVGKVWRFRY SYWNSSQSYV  240
LTKGWSRFVK EKGLKAGDTV GFYRSKGGDG QLYIECRIRA AVDGGVSPDK VFRLFGVDIM  300
KAAVGANENG KRGLEAMEAA MSGPGSVGWF KKQCVVGM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-93RAV family protein