PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020686105.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 233aa    MW: 25626.5 Da    PI: 7.366
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020686105.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.7e-1069117354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +++  rE+ RRdr+N++f eL ++l +    + +K +Ka iL  A + + +L
  XP_020686105.1  69 KSKACREKMRRDRLNERFLELSSILDPG---KLPKSDKAGILSDAARVLAQL 117
                     56789**********************9...9**************999888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MEPNTIPDYW IDDAGGGSDC ELRCALESFC DVPPPASGSG VKEVHRNGCG LEQIGSWKRL  60
RDEACCGSKS KACREKMRRD RLNERFLELS SILDPGKLPK SDKAGILSDA ARVLAQLKSE  120
AEQLKEANKK LQETIKQLKV EKNELRDDKL GLKLEKEKLE LQVKTTGTPT AGLMPPTIAV  180
HPASGPAIYK AHGEAPAKEV APLNAFPCLA MWQWLPPAFL DTTHDPKLWP PHA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.16e-47bHLH family protein