PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020686454.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CPP

Protein Properties

Length: 774aa MW: 84292.7 Da PI: 6.5327

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020686454.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.5	4.1e-16	482	519	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +++CnCkkskClk+YCeCfaag++C e C+C++C Nk XP_020686454.1 482 CRRCNCKKSKCLKLYCECFAAGVYCVEPCSCQGCLNKP 519 789*********************************96 PP
2	TCR	50.6	3.9e-16	566	604	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN XP_020686454.1 566 RHKRGCNCKKSNCLKKYCECYQGGVGCSFSCRCEGCKNA 604 589***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence
MDTPERSKVG GTPISKFEDS PVFNFINSLS PIQPVKSVHS IHTFHSPGSA AISSVFSSPH 60 VSFHKESRFF IRHPFPDSVK QDASSDGLDE SNVHSGVSNG AVLSASIVLS QENCNITCSL 120 NEASVDLADD SSTQPDFSQS VQVDNGSPNH NTSPFYGVKL DFKLDISCTP SERVKLVQNM 180 SENTKNPHTT KIGLEVQFPA DQMKEDASES DWDNLISDNT DDLLIFETAT GSETSKSEEK 240 DYGISLNSHP NASGLHNVSQ DSFMDDDGET GEHDGMSPTR SSACQEHENF VDLNLKTEAE 300 LNNGVPLGCK VDSQQHRGVR RRCLVFEAAG VSKKNIHNNS NAPPSISLPI NAKPNSENRQ 360 LVSSKTSKTP VPYVLPGIGL HLNALARTSK DRPISQKTKT PGREFISRPC SMRPFSPAIA 420 GENQSFKLSD PHQSPDPNGS ELHDSQAVHS DVSLIPALGI EESTSPKKKR RKTENSGENE 480 GCRRCNCKKS KCLKLYCECF AAGVYCVEPC SCQGCLNKPV HEETVLTTRK QIESRNPLAF 540 APKVIRTSEH DQEMGEESNK TPASARHKRG CNCKKSNCLK KYCECYQGGV GCSFSCRCEG 600 CKNAFGRKDG FEEIEFEEDL DACEKEGVKS DDGKANANVP KLEHNHLSES ILPVTPFPSC 660 RSSVKLPFLS SGKPPRSSTL SLMNRSENQQ AECKSDQIFH DDDTSEDLRV NSSPCTAVKT 720 ASPNGKRVSL PLNGFGLSPN LKGGRKLILK SIPSFPSLTT DAPSSTQINS SVFS

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence

MDTPERSKVG GTPISKFEDS PVFNFINSLS PIQPVKSVHS IHTFHSPGSA AISSVFSSPH  60
VSFHKESRFF IRHPFPDSVK QDASSDGLDE SNVHSGVSNG AVLSASIVLS QENCNITCSL  120
NEASVDLADD SSTQPDFSQS VQVDNGSPNH NTSPFYGVKL DFKLDISCTP SERVKLVQNM  180
SENTKNPHTT KIGLEVQFPA DQMKEDASES DWDNLISDNT DDLLIFETAT GSETSKSEEK  240
DYGISLNSHP NASGLHNVSQ DSFMDDDGET GEHDGMSPTR SSACQEHENF VDLNLKTEAE  300
LNNGVPLGCK VDSQQHRGVR RRCLVFEAAG VSKKNIHNNS NAPPSISLPI NAKPNSENRQ  360
LVSSKTSKTP VPYVLPGIGL HLNALARTSK DRPISQKTKT PGREFISRPC SMRPFSPAIA  420
GENQSFKLSD PHQSPDPNGS ELHDSQAVHS DVSLIPALGI EESTSPKKKR RKTENSGENE  480
GCRRCNCKKS KCLKLYCECF AAGVYCVEPC SCQGCLNKPV HEETVLTTRK QIESRNPLAF  540
APKVIRTSEH DQEMGEESNK TPASARHKRG CNCKKSNCLK KYCECYQGGV GCSFSCRCEG  600
CKNAFGRKDG FEEIEFEEDL DACEKEGVKS DDGKANANVP KLEHNHLSES ILPVTPFPSC  660
RSSVKLPFLS SGKPPRSSTL SLMNRSENQQ AECKSDQIFH DDDTSEDLRV NSSPCTAVKT  720
ASPNGKRVSL PLNGFGLSPN LKGGRKLILK SIPSFPSLTT DAPSSTQINS SVFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	466	472	PKKKRRK
2	467	471	KKKRR
3	467	472	KKKRRK
4	468	472	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-125	CPP family protein