PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020686494.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20793.8 Da    PI: 4.8244
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020686494.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.71.5e-232168249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ie + nrqv fskRr+g++KKA+ELS+LC+aevav++fs tgk y +
  XP_020686494.1 21 LIEKEENRQVCFSKRRKGLFKKASELSTLCGAEVAVVVFSLTGKPYCF 68
                    699****************************************97765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MNPVEVKKRI CNGRKKIDIK LIEKEENRQV CFSKRRKGLF KKASELSTLC GAEVAVVVFS  60
LTGKPYCFGH PSVDHVLRRF LSNISGPSDT LSPASTNCSE LINDDQLVQK PFWWDVDLHS  120
MGDDELRLYE KFLLEQQTVV TEASEAAMEQ IDAVPHTNPE VGEADYFLWL LQEIKDLPDI  180
DPI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-22M-type_MADS family protein