PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020686613.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family FAR1
Protein Properties Length: 159aa    MW: 18660 Da    PI: 7.5405
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020686613.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.82.1e-1971156288
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                      Y++Y+k++GFsvrk+++++ +++ + ++++f Csk  +++  + +  +++ +++ trtgC  +++ + ++ g w+v+k+ ++HnHe
  XP_020686613.1  71 AYCNYGKNLGFSVRKDHHSYWSNSINLKSNNFICSKADFKKLPDLN-IQRKYRKSDTRTGCPSMIRFTVDEAGYWKVKKFIENHNHE 156
                     59*****************************************999.88899999*******************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
MKMKIDQDLE EDVCFYEQTI FLQGSKEADN LKNADVLETS AHKAEHLKLV RLDEKFSLSD  60
VYVNEKEAYE AYCNYGKNLG FSVRKDHHSY WSNSINLKSN NFICSKADFK KLPDLNIQRK  120
YRKSDTRTGC PSMIRFTVDE AGYWKVKKFI ENHNHESQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-10FAR1 family protein