PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020686630.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 322aa MW: 35077.6 Da PI: 9.7115

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020686630.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.8e-05	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_020686630.1 65 FICEICNKGFQRDQNLQLHRRGH 87 89*******************88 PP
2	zf-C2H2	14.2	0.00013	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC Cgk++ +s++k H +t+ XP_020686630.1 143 WKCDRCGKRYAVNSDYKAHSKTC 165 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MSSGEAFRIP SSSILPFSYD QNPNPNLITT AAAPLKKKRN LPGTPDPDAE VIALSPKTLM 60 ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLRQRPPGG SPVRKRVFVC PEPTCVHHDP 120 ARALGDLTGI KKHFSRKHGE KKWKCDRCGK RYAVNSDYKA HSKTCGSREY RCDCGTLFSR 180 KDSFVTHRAF CDALMQEPPV PAVDSLSNGS DEKADLNLWI NRPAAAAASM SATALLQKAA 240 EMGVMASSSS SSSAFFSGLV RSMKGGGLEY GGGGMTRDFL GLGEEEEGAG SRSIEEMRRF 300 ASFSSGGDYK STNATSSYNA RG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-102	C2H2 family protein