PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020686666.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

E2F/DP

Protein Properties

Length: 426aa MW: 46933.8 Da PI: 5.7043

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020686666.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	81.7	6.3e-26	154	219	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++ll+++e+g+++ln++a+ L dv ++RRiYDi+NVLe+++li k+ kn+i+wkg XP_020686666.2 154 RYDSSLGLLTKKFINLLQQAEDGTLDLNKAAEIL---DV--QKRRIYDITNVLEGVGLIVKQLKNRIHWKG 219 6899****************************.....****************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MAGAAESSCP IERPANLRPQ PPPPRPGSSQ ILHPGSKQHF PFPPSLSTAG GVFDRRVLTG 60 LTASVSDEKR NGKETVPAPE PSSKTVNGTI DHAGRSRQLV VGKEQKESFN NHLSPSLTGV 120 KRQRTPKSSR NKKSVQYDPG PCDGYPVSAL STCRYDSSLG LLTKKFINLL QQAEDGTLDL 180 NKAAEILDVQ KRRIYDITNV LEGVGLIVKQ LKNRIHWKGF DMSRPMEVGA EIAGLKAEIQ 240 SLESEDCRLD AMICNMQENL LSLSEDESNQ KWLYLTKEDI SSIPCFQNST LIAVKAPHGT 300 SLEVPNPDEG LEFTQRQYQM LLRSSMGPID CYLLSNHEER FEPSNLDQHF AAMDLSVQSS 360 CPNISCMMAP RPGDQERTEA NKNSSDANIS RDSIGGIVKI TPCEDVSDYW LLSEDGYGVS 420 ESWRAA

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MAGAAESSCP IERPANLRPQ PPPPRPGSSQ ILHPGSKQHF PFPPSLSTAG GVFDRRVLTG  60
LTASVSDEKR NGKETVPAPE PSSKTVNGTI DHAGRSRQLV VGKEQKESFN NHLSPSLTGV  120
KRQRTPKSSR NKKSVQYDPG PCDGYPVSAL STCRYDSSLG LLTKKFINLL QQAEDGTLDL  180
NKAAEILDVQ KRRIYDITNV LEGVGLIVKQ LKNRIHWKGF DMSRPMEVGA EIAGLKAEIQ  240
SLESEDCRLD AMICNMQENL LSLSEDESNQ KWLYLTKEDI SSIPCFQNST LIAVKAPHGT  300
SLEVPNPDEG LEFTQRQYQM LLRSSMGPID CYLLSNHEER FEPSNLDQHF AAMDLSVQSS  360
CPNISCMMAP RPGDQERTEA NKNSSDANIS RDSIGGIVKI TPCEDVSDYW LLSEDGYGVS  420
ESWRAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.2	2e-94	E2F/DP family protein