PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020686969.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family BBR-BPC
Protein Properties Length: 299aa    MW: 32578.1 Da    PI: 10.0955
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020686969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind303.38.7e-9312991301
       GAGA_bind   1 mdddgsre.rnkg.yyepaaslkenlglqlmssiaerdakirernlalsekkaavaerd..........maflqrdkalaernkalverdnklla 83 
                     mdddg+   +n+g yy+    lk nlglqlm s+ erd+k+  + l   ++ + + +r+          m f  r+ + ++      +rd+  + 
  XP_020686969.1   1 MDDDGTLGiQNWGgYYRAP-PLKGNLGLQLMPSVGERDTKPFFSGL---GSGGGYIQREcevtgpsampMGF-ARNIWYNS------NRDSSKML 84 
                     9*****999****777655.9********************66666...66666666666677777777999.8999**99......45544444 PP

       GAGA_bind  84 lllvensla......salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkr..qrakkpkekkakkkkkk 170
                     ++++ n +       s lp ++      + +++lq+     l++  v+l+ee+   ++ iee a  ++e+ + +kr   +++  k++k kk kk 
  XP_020686969.1  85 NVFHGNHQEqshsygSLLPEATAGTVSGTAVHTLQM-----LQNVEVPLKEER---VPAIEEPAAPQQEVVSLNKRskGQGRPSKASKPKKDKK- 170
                     444444333111133445554444444445555555.....444445544433...33344333333333333322003444455556666555. PP

       GAGA_bind 171 sekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgaf 265
                      ++++++++++    r ++ kk++d+v+ng++lD s++P+PvC+CtG ++qCY+WG+GGWqSaCCtt iS+yPLP+stkrrgaRiagrKmSqgaf
  XP_020686969.1 171 ATTPREESSNPF--GRGRSAKKTMDMVINGIDLDLSGMPAPVCTCTGRPQQCYRWGAGGWQSACCTTIISIYPLPMSTKRRGARIAGRKMSQGAF 263
                     334444444444..689****************************************************************************** PP

       GAGA_bind 266 kklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     kk+LekLa+eG d+s p+DLk +WAkHGtnkfvtir
  XP_020686969.1 264 KKVLEKLAGEGQDFSSPIDLKPFWAKHGTNKFVTIR 299
                     ***********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MDDDGTLGIQ NWGGYYRAPP LKGNLGLQLM PSVGERDTKP FFSGLGSGGG YIQRECEVTG  60
PSAMPMGFAR NIWYNSNRDS SKMLNVFHGN HQEQSHSYGS LLPEATAGTV SGTAVHTLQM  120
LQNVEVPLKE ERVPAIEEPA APQQEVVSLN KRSKGQGRPS KASKPKKDKK ATTPREESSN  180
PFGRGRSAKK TMDMVINGID LDLSGMPAPV CTCTGRPQQC YRWGAGGWQS ACCTTIISIY  240
PLPMSTKRRG ARIAGRKMSQ GAFKKVLEKL AGEGQDFSSP IDLKPFWAKH GTNKFVTIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.11e-78BBR-BPC family protein