PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020686984.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 375aa MW: 41483.1 Da PI: 7.9111

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020686984.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.2	3.4e-32	213	266	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_020686984.1 213 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 266 9****************************************************7 PP
2	Myb_DNA-binding	46.8	6.7e-15	214	265	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT ++ ++v+av++lGg+ t+k++ + m k +tl ++ks++q+y+ XP_020686984.1 214 RMRWTSTLHARFVHAVELLGGHeraTPKSVLELMDvKDLTLAHVKSHLQMYR 265 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MQVQRVFMEA GSMPSPPDLS LHISLPNSSP SLREGAAGVA DAHTELSLAS PPSISDTMRI 60 WRRQGRMASP PRELSPEGGT RPIKGIPIYN SSISNNSNSN NPFNFLTQMP SSYQSAWSSA 120 SETPACFLSP IAGVPPSGST YNHGFVAPLA RFNSMPANSA KFYGQQSYDY HHLLHHHQQQ 180 QQQFGFGPFE APNSLMRSRL LSKITTKRSM RAPRMRWTST LHARFVHAVE LLGGHERATP 240 KSVLELMDVK DLTLAHVKSH LQMYRTVKTT DKAAASSGQS DGSGDEDLNF RRLMDNRGTH 300 DTDSASKWSN SSSRGAWLHS NASEMDDLRP ANFSSEAECN MNSSPNESPR SLKEFENPSL 360 EFTLGRPDWH SSEHD

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MQVQRVFMEA GSMPSPPDLS LHISLPNSSP SLREGAAGVA DAHTELSLAS PPSISDTMRI  60
WRRQGRMASP PRELSPEGGT RPIKGIPIYN SSISNNSNSN NPFNFLTQMP SSYQSAWSSA  120
SETPACFLSP IAGVPPSGST YNHGFVAPLA RFNSMPANSA KFYGQQSYDY HHLLHHHQQQ  180
QQQFGFGPFE APNSLMRSRL LSKITTKRSM RAPRMRWTST LHARFVHAVE LLGGHERATP  240
KSVLELMDVK DLTLAHVKSH LQMYRTVKTT DKAAASSGQS DGSGDEDLNF RRLMDNRGTH  300
DTDSASKWSN SSSRGAWLHS NASEMDDLRP ANFSSEAECN MNSSPNESPR SLKEFENPSL  360
EFTLGRPDWH SSEHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	3e-50	G2-like family protein