PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020686997.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 235aa MW: 27031.3 Da PI: 5.0978

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020686997.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	7.7e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G ++W++ ++ g+ R++k+c++rw +yl XP_020686997.1 14 KGPWTPEEDRILVSYIQRYGHDNWRALPKQAGLSRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.8	3.8e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE+e ++ ++++lG++ W++Ia++++ gRt++++k+ w++yl XP_020686997.1 67 RGDFSKEEEETIIYLHALLGNR-WSAIAAKLP-GRTDNEIKNVWHTYL 112 899*****************.*****.***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MVKAACCDEM GLKKGPWTPE EDRILVSYIQ RYGHDNWRAL PKQAGLSRCG KSCRLRWTNY 60 LRPDVKRGDF SKEEEETIIY LHALLGNRWS AIAAKLPGRT DNEIKNVWHT YLKKRLNPNQ 120 AIKESKRRSR NNAVNKEVKK NDLEEQVSPA CSQSDASSFV ITTENFNGWW KEDSMDFLTE 180 LPEIDEILMS GVQTASQNWA GDEEEEDSTA IPSNEDDIRF WLNLLAEAGN LECFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	3e-71	MYB family protein