PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020686999.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 316aa    MW: 34892.1 Da    PI: 7.2915
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020686999.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61e-1191135347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++l +g+W+ I+r+   +Rt+ q+ s+ qky
   XP_020686999.1  91 PWTEEEHRLFLLGLQKLRKGDWRGISRKYVITRTPTQVASHAQKY 135
                      7*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MTRRCSHCSN NGHNSRTCPN RGVKLFGVRL TDGSIRKSAS MGNLSLFAGS AGGSSPAEGL  60
EASGTAGDGY ASEDLVQGSS SSCRERKRGI PWTEEEHRLF LLGLQKLRKG DWRGISRKYV  120
ITRTPTQVAS HAQKYFIRQS NASRRRRRTS LFDMVPDETA EPELFPMNYK EPETQEHHCT  180
PAPVLQEEEC ESMDSNNSAD EEESDVIKPE ISESQGSYQV IYPAYFSPFF PFTLPPWPLS  240
AAETVEKKAH EIVKPTPLHT KSPIKVDELL GMSKLSIGES GVEEAAPSPS LSVNLLIANR  300
HSAFHANYPA RPKAAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144149RRRRRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-100MYB_related family protein