PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020687015.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ERF
Protein Properties Length: 191aa    MW: 21091.7 Da    PI: 9.5205
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020687015.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-1751100255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a + ++g
  XP_020687015.1  51 TYRGVRMRN-WGKWVSEIREPKK---KSRIWLGTFPTAEMAARAHDVASLTIKG 100
                     69****998.**********854...6*******************99887766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    
MEQSLPHQCQ SLLSPSSSSS SSSSCSSSSS SPKPEESIKP KKRSREGKHP TYRGVRMRNW  60
GKWVSEIREP KKKSRIWLGT FPTAEMAARA HDVASLTIKG QSAYLNFPHL AAEFPRPATT  120
SPKDIQAAAA KAAAFTDHQA ALPKPTPPPI TPPSTTDEDS AFLDLPDLLD LRASWVSLWT  180
DELNSRFVWE Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.19e-47ERF family protein