PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687155.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MIKC_MADS

Protein Properties

Length: 228aa MW: 25726.2 Da PI: 6.8773

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687155.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.6	9e-25	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n + rqvtfskRr g++KKAeEL +LCdaev +++fs tgkl+++s+ XP_020687155.1 10 KIDNATARQVTFSKRRRGLFKKAEELAILCDAEVGLMVFSATGKLFDFST 59 69**********************************************96 PP
2	K-box	61	4.6e-21	92	172	20	100
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ L +++ + +++R++ GedL+ L+l+eLqqLe+ Le++l+++ +kK e +leqi++l+kk +l een++Lr +++e XP_020687155.1 92 SMTILSNQVAEATHQLRNMRGEDLHGLTLQELQQLEKTLETGLSRVTQKKGEQILEQINHLRKKGVQLMEENTRLRYQVAE 172 566788889999999*************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MAREKIKIRK IDNATARQVT FSKRRRGLFK KAEELAILCD AEVGLMVFSA TGKLFDFSTS 60 SMKEIIDRYN VHSKDHTAVD VPSLDLQLEN GSMTILSNQV AEATHQLRNM RGEDLHGLTL 120 QELQQLEKTL ETGLSRVTQK KGEQILEQIN HLRKKGVQLM EENTRLRYQV AEMSKMGKQV 180 VVDPENAFHE DGQSSESVTN VTHCGNPYEN DDTSDTCLKL GLSCSGWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	2e-72	MIKC_MADS family protein