PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687242.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 582aa MW: 63771 Da PI: 7.0819

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687242.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51	3.9e-16	197	285	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a++e+ +l+rg+l++ +We+v+ + +++ ++ +qCk+k +nl+kryk + ++ +++ + ++s++p+f+++e XP_020687242.1 197 EWSDSAIGCLLDAYTEKYIQLNRGNLRGRDWEDVATTVsercDKQKSGKTVEQCKNKVDNLKKRYKVECQRLSSG-NLAVSHWPWFKKME 285 5*****************************998877666588899999********************9.88999******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence
MASCDDDFAL LGDEAQSHHH HPQQQQQASA TVAAGAVSFS SHRYIPKASV PLHSRSIHLN 60 TINSKKVPIG SVGQDDDHEG YGEAFAPTDV NPHSHCFADD DPGSNPFDSA QPPEDDDAEG 120 DNNPNNKSHP AASTSHLHHQ QQQQHHHASR AESKRRDRDE LSDGESPYGY NMGNKRSSRS 180 ALAAPTSSGD YRKDREEWSD SAIGCLLDAY TEKYIQLNRG NLRGRDWEDV ATTVSERCDK 240 QKSGKTVEQC KNKVDNLKKR YKVECQRLSS GNLAVSHWPW FKKMEQVVGS SSSSKIVPDE 300 DKAAALVDTN PAQRQMKRYP VTSPVSASLT GSFKLKSLSN PRWKRTVLKI SGSTLAGTGP 360 QNVDPKVLML IAREVSLASR VGVEVAIVVG GRNFFCGNSW VATTGTDRAT TYQIGMMASV 420 MNALLLQASF EKIGVETRVQ TAFMMQEVAE PYIRRRAIRH LEKGRIVIFG GIGVGTGNPL 480 FTTDTATALR ASEINAEAVL KGTTTDGVYD CHSRNNSSAF EHFSFRELVS RGFTAMDMTA 540 VTFCEENNIP VVLFNLMEPS NISRALCGDQ VGTLIDQSGR IN

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence

MASCDDDFAL LGDEAQSHHH HPQQQQQASA TVAAGAVSFS SHRYIPKASV PLHSRSIHLN  60
TINSKKVPIG SVGQDDDHEG YGEAFAPTDV NPHSHCFADD DPGSNPFDSA QPPEDDDAEG  120
DNNPNNKSHP AASTSHLHHQ QQQQHHHASR AESKRRDRDE LSDGESPYGY NMGNKRSSRS  180
ALAAPTSSGD YRKDREEWSD SAIGCLLDAY TEKYIQLNRG NLRGRDWEDV ATTVSERCDK  240
QKSGKTVEQC KNKVDNLKKR YKVECQRLSS GNLAVSHWPW FKKMEQVVGS SSSSKIVPDE  300
DKAAALVDTN PAQRQMKRYP VTSPVSASLT GSFKLKSLSN PRWKRTVLKI SGSTLAGTGP  360
QNVDPKVLML IAREVSLASR VGVEVAIVVG GRNFFCGNSW VATTGTDRAT TYQIGMMASV  420
MNALLLQASF EKIGVETRVQ TAFMMQEVAE PYIRRRAIRH LEKGRIVIFG GIGVGTGNPL  480
FTTDTATALR ASEINAEAVL KGTTTDGVYD CHSRNNSSAF EHFSFRELVS RGFTAMDMTA  540
VTFCEENNIP VVLFNLMEPS NISRALCGDQ VGTLIDQSGR IN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein