PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687255.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 851aa MW: 97376.8 Da PI: 7.3379

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687255.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.5	8.2e-27	91	179	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA +vGFsvr+++s++sk n+++++ +fvCskeg+++e++ +k+r++ a+ r gCka+l+v ++ d+kw+vtkl++eHnHe+ XP_020687255.1 91 FYIAYAGKVGFSVRIARSRRSKCNESVIMLRFVCSKEGFSREKRIIaGKKTRKRAASIREGCKAMLEVIRRGDEKWVVTKLVKEHNHEV 179 9************************************998876546788888999****************************96 PP
2	FAR1	63.5	6.1e-20	213	304	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY +YA++vGF+ r+++s++s ++++ ++ ++vCsk+ +++ ++++ + ++ +++ ++ gC+a +++ +++ ++w+v+kleleH+Hel+p XP_020687255.1 213 FYYAYASRVGFEARVRQSRRSLHDESLKMLKLVCSKHRYHSGRDENgdDGRKGSNQDPSKEGCNALFEIVRKEADVWMVSKLELEHTHELTP 304 9*************************************999999555666669999*****************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 851 aa Download sequence
MMDGHANSTN GLIEGHVELD DNINFWASFG VGPHVVVEPD HSIQHHEQQM EQHMAYSEHP 60 SRRELCAVEV DPRIEPYVGM EFDSGEAAKT FYIAYAGKVG FSVRIARSRR SKCNESVIML 120 RFVCSKEGFS REKRIIAGKK TRKRAASIRE GCKAMLEVIR RGDEKWVVTK LVKEHNHEVG 180 MPSKVHYIAT EGDAELLPFV GMEFESLEMA KTFYYAYASR VGFEARVRQS RRSLHDESLK 240 MLKLVCSKHR YHSGRDENGD DGRKGSNQDP SKEGCNALFE IVRKEADVWM VSKLELEHTH 300 ELTPSPPSKV RCVRSQGEIL VIAKNFSDTR NLLLNGQDSL NFPREIRYND LGPEDANNLL 360 EYFKKTQTDN PAFLYAVQYE QNNCMTNIFW ADAKARMAYH YFGDAVTLDM TYKNDKDFIP 420 LVLFTGVNHH LQPVVFGSAF LVDESETSFL WLFETWIAAM FSRPPVSLIT SLNWAIDTVV 480 AKVFPGTRHF FCRKHVVSTI LVELSDLCSA HPVFEEELTR CIDESRTSES FEACWNAILV 540 KYDLNDNVYL HSLYSIRNKW VPLYLRDTFC VQISPLQRSQ TFDKVIEKYC TSKTQLRLAV 600 RQLGLALSSN CEKEAQADYI TMFDKPFLRT ASPMEKQAAN IYTRTVFDRF QEEFVESLGY 660 HVDKVEDGMP CKYQVSRNED AEGTYTVVVN VSENKAHCSC CMFEASGILC RHALKVFIIV 720 GIRTLPKEYI LKRWTKYAKG SSLSEEFGLD IRANCEEHSV ARYNDLCHDA IRCAKEGATS 780 AEFYSIAKEA FQKAIAEIIS AKQKRGEQTL QSFKIAQKKN LKRPGKTTTP RKDSSSKTFK 840 RTTVPEENDY M

Sequence ? help Back to Top

Protein Sequence Length: 851 aa Download sequence

MMDGHANSTN GLIEGHVELD DNINFWASFG VGPHVVVEPD HSIQHHEQQM EQHMAYSEHP  60
SRRELCAVEV DPRIEPYVGM EFDSGEAAKT FYIAYAGKVG FSVRIARSRR SKCNESVIML  120
RFVCSKEGFS REKRIIAGKK TRKRAASIRE GCKAMLEVIR RGDEKWVVTK LVKEHNHEVG  180
MPSKVHYIAT EGDAELLPFV GMEFESLEMA KTFYYAYASR VGFEARVRQS RRSLHDESLK  240
MLKLVCSKHR YHSGRDENGD DGRKGSNQDP SKEGCNALFE IVRKEADVWM VSKLELEHTH  300
ELTPSPPSKV RCVRSQGEIL VIAKNFSDTR NLLLNGQDSL NFPREIRYND LGPEDANNLL  360
EYFKKTQTDN PAFLYAVQYE QNNCMTNIFW ADAKARMAYH YFGDAVTLDM TYKNDKDFIP  420
LVLFTGVNHH LQPVVFGSAF LVDESETSFL WLFETWIAAM FSRPPVSLIT SLNWAIDTVV  480
AKVFPGTRHF FCRKHVVSTI LVELSDLCSA HPVFEEELTR CIDESRTSES FEACWNAILV  540
KYDLNDNVYL HSLYSIRNKW VPLYLRDTFC VQISPLQRSQ TFDKVIEKYC TSKTQLRLAV  600
RQLGLALSSN CEKEAQADYI TMFDKPFLRT ASPMEKQAAN IYTRTVFDRF QEEFVESLGY  660
HVDKVEDGMP CKYQVSRNED AEGTYTVVVN VSENKAHCSC CMFEASGILC RHALKVFIIV  720
GIRTLPKEYI LKRWTKYAKG SSLSEEFGLD IRANCEEHSV ARYNDLCHDA IRCAKEGATS  780
AEFYSIAKEA FQKAIAEIIS AKQKRGEQTL QSFKIAQKKN LKRPGKTTTP RKDSSSKTFK  840
RTTVPEENDY M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-148	FAR1 family protein