PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687294.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

AP2

Protein Properties

Length: 350aa MW: 39719.2 Da PI: 8.6306

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687294.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.1	5.8e-15	47	105	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.pse...ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++GV++++++gr++A+++d ++ ++ k ++++lg ++ +e Aa a++ a++k++g XP_020687294.1 47 IFRGVTRHRWTGRYEAHLWDkNCWnysQNkKGRQVYLGAYDDEEAAAHAYDLAALKYWG 105 69****************999966433455***********************98 PP
2	AP2	50.9	4e-16	148	199	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +g+W+A+I + g +k+ +lg++ t eeAa+a++ a+ k++g XP_020687294.1 148 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDVAAIKYRG 199 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MAKKKQSNSP SFTDTNDSNR GSFKGIEKVR RTRKCVPRES PSQRSSIFRG VTRHRWTGRY 60 EAHLWDKNCW NYSQNKKGRQ VYLGAYDDEE AAAHAYDLAA LKYWGQETIL NFPLLNYTGE 120 VKEMEGQSKE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG KWEARIGRVF GNKYLYLGTY 180 ATQEEAAAAY DVAAIKYRGI NAVTNFDLSR YIKLVRPNLE DNRSMNPSQS TNASPNSCLS 240 FSQEQQQQNY EQILSLPHSQ STIPTPSSAL ELLLRSSKFK EMLESTSAIN TPPSLQDSGE 300 KSPSQCSFPD DIQTFFKVHD NESFVVEGAD VIFGELNAFE APIFHCELDV

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MAKKKQSNSP SFTDTNDSNR GSFKGIEKVR RTRKCVPRES PSQRSSIFRG VTRHRWTGRY  60
EAHLWDKNCW NYSQNKKGRQ VYLGAYDDEE AAAHAYDLAA LKYWGQETIL NFPLLNYTGE  120
VKEMEGQSKE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG KWEARIGRVF GNKYLYLGTY  180
ATQEEAAAAY DVAAIKYRGI NAVTNFDLSR YIKLVRPNLE DNRSMNPSQS TNASPNSCLS  240
FSQEQQQQNY EQILSLPHSQ STIPTPSSAL ELLLRSSKFK EMLESTSAIN TPPSLQDSGE  300
KSPSQCSFPD DIQTFFKVHD NESFVVEGAD VIFGELNAFE APIFHCELDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-102	AP2 family protein