PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687329.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 258aa MW: 28568.1 Da PI: 7.0181

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687329.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.2	4.6e-19	10	55	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT++Ede l +v+++G+++W++I++ ++ gR++k+c++rw + XP_020687329.1 10 KGPWTPDEDEMLQTLVEKHGPKNWSLISQSIP-GRSGKSCRLRWCNQ 55 79****************************.*********985 PP
2	Myb_DNA-binding	61	2.6e-19	64	106	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde++v a++++G++ W+tI+r ++ gRt++++k++w++ XP_020687329.1 64 PFTPEEDEIIVSAHHRFGNK-WATISRLLP-GRTDNNIKNHWNST 106 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MAANDVDPIK GPWTPDEDEM LQTLVEKHGP KNWSLISQSI PGRSGKSCRL RWCNQLSPKV 60 EHRPFTPEED EIIVSAHHRF GNKWATISRL LPGRTDNNIK NHWNSTLKRK QAAVAAVASA 120 SEERMTGAFE DCRLIKRPNS PETDSNTRSP NRHDPFTSLT LSPPGSSSDK YQSAVNQKHS 180 DPQFLASPSA TTLAARTTTP EEKLPPAVAF PFSPEFLEAM QEVIHQEVQN YMSGLEHQGM 240 IPPPPPPTPP TPPTPPPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	7e-61	MYB family protein