PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020687348.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARR-B
Protein Properties Length: 677aa    MW: 73914.5 Da    PI: 6.2077
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020687348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.31.6e-28228281155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  XP_020687348.1 228 KPRVVWSVELHQQFVNAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 281
                     79*******************.********************************8 PP
2Myb_DNA-binding41.33.5e-13230280148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e+++++v+av+qlG +   +k+I + m+  g+t++++ s++qk++
   XP_020687348.1 230 RVVWSVELHQQFVNAVNQLGIDkaVPKRILELMNvPGLTRENVASHLQKFR 280
                      678**********************************************97 PP
3Response_reg79.11.5e-26431511109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+ + +++l+ +l+k +y +v++++++ +al ll+e++  +D+++ D+ mp+mdG++ll+     e++lp+i+++a g  + + + +k G
  XP_020687348.1  43 VLVVDDDVTCLKILEHMLQKCRY-HVTTCSEALKALSLLRERKgsFDVVISDVHMPDMDGFKLLELVGL-EMDLPVIMMSADGRTSAVMRGIKHG 135
                     89*********************.***************999999*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel +
  XP_020687348.1 136 ACDYLIKPVRIEELKN 151
                     *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    
MAAIQKLSVQ NANAGGSYSS CRVDAGESTA LVAPELFPAG LRVLVVDDDV TCLKILEHML  60
QKCRYHVTTC SEALKALSLL RERKGSFDVV ISDVHMPDMD GFKLLELVGL EMDLPVIMMS  120
ADGRTSAVMR GIKHGACDYL IKPVRIEELK NIWQHVVRKK WNESKDVEHS GSFEDSDRQR  180
RVGDEAEYDS LVNEGTDGSW KTPKKKRDSK DDEEDGELEN EDPSASKKPR VVWSVELHQQ  240
FVNAVNQLGI DKAVPKRILE LMNVPGLTRE NVASHLQKFR LYLKRISGVT QHQSALSNPF  300
CSPVEPNTKV GSLGRLDFHS LTATGQIPPQ TLAVLHAELL GRPSGNVVLP VIDSPILLQA  360
SSQNSKFLPV EKEIAFGQPL FQCQSGISKP FPPSGINSQD VPSSFSSWPS NQLGVTGSNS  420
ELGDISNTQN NNLLMQMLQH QQEPFNLVVS ESHNAINVRP SCLVVPTQLP NNLNGGNCSM  480
PVNKNSMVVA PQTSNSTFNG SSITFDYNIL SSQPNNVPLS MGRVADGDFK KIGLLSSYST  540
PASVSSPSVS SGSVCTNGGA GWRLHNSNMN FDSLNRSPGH LPNLCIPGTE VKSGTSVNYE  600
HARNLGFVGK GTCLPSRFAV DDIESPTNDW NNIKTSVFDD VDKVKQELNL DFLEGSKVEK  660
TMLPTFPSND FMGVLSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-118ARR-B family protein