PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020687479.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ERF
Protein Properties Length: 319aa    MW: 34146.4 Da    PI: 4.9593
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020687479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20144193255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  XP_020687479.1 144 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAESAARAYDEAALRFRG 193
                     7********.**********7.....337************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MCFKVANPPE FSPAREGEEE ELATAATMFS GRWRAEEMSA MVSALTRVVS GEEPAMTGGY  60
LDSAGSASAP PSSLYNASLL SPHSMFGAGV GGGGVKRERD EESVIGYYSG APASISHSAS  120
SSQAPSMEET TPSQVETENQ PRRRYRGVRQ RPWGKWAAEI RDPHKAARVW LGTFDTAESA  180
ARAYDEAALR FRGSRAKLNF PENARLQPPE IVSSGQFLGS PVSSASRDYL EYSRLLRGEG  240
QYANLLNNEN ILNSASPLSS SSTSSSSSTS SSSVLNTFYG LGGGEQQRMG YLGQSGIWGT  300
SFPATKWEDS DEFPPSSSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-22ERF family protein