PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687482.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 411aa MW: 45345.8 Da PI: 8.4397

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687482.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19	3.7e-06	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H XP_020687482.1 76 FVCEICGKGFQRDQNLQLHRRGH 98 89*******************88 PP
2	zf-C2H2	12	0.00062	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + s+ k H +t+ XP_020687482.1 154 WKCEKCSKKYAVYSDWKAHVKTC 176 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MFPSATISNS TSISEDASVS TETKAHDHFN NLSQLFTPTS PHPKPKTKRS QAGNPEDPEA 60 EVVALSPKSL LATNRFVCEI CGKGFQRDQN LQLHRRGHNL PWRLRQRNNG KEAVKKRVYV 120 CPEASCVHHH PSRALGDLTG IKKHFCRKHG EKKWKCEKCS KKYAVYSDWK AHVKTCGTRE 180 YRCDCGTLFS RKDSFITHRA FCDALAEESA RLIANSDPAT INNTLSHPLL HNPLFPSFAN 240 SWNPSYNSNP NFVAFLPMPN PNPNPNPNPT TSSFELNPGD SFQPFVNPYF SAHHLHPSAA 300 AATQPPLSAT ALLQRASNIG HMRLTDGGVD YDARAFSASQ SADRLTHDFL GVDSSDVAVE 360 EFLPLPGIGM DVVTTGPCVD NGGDGDHTKP IVGFSFPRVT GAWRDHRGVR D

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MFPSATISNS TSISEDASVS TETKAHDHFN NLSQLFTPTS PHPKPKTKRS QAGNPEDPEA  60
EVVALSPKSL LATNRFVCEI CGKGFQRDQN LQLHRRGHNL PWRLRQRNNG KEAVKKRVYV  120
CPEASCVHHH PSRALGDLTG IKKHFCRKHG EKKWKCEKCS KKYAVYSDWK AHVKTCGTRE  180
YRCDCGTLFS RKDSFITHRA FCDALAEESA RLIANSDPAT INNTLSHPLL HNPLFPSFAN  240
SWNPSYNSNP NFVAFLPMPN PNPNPNPNPT TSSFELNPGD SFQPFVNPYF SAHHLHPSAA  300
AATQPPLSAT ALLQRASNIG HMRLTDGGVD YDARAFSASQ SADRLTHDFL GVDSSDVAVE  360
EFLPLPGIGM DVVTTGPCVD NGGDGDHTKP IVGFSFPRVT GAWRDHRGVR D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	4e-92	C2H2 family protein