PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687483.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 410aa MW: 45216.6 Da PI: 8.5561

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687483.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19	3.7e-06	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H XP_020687483.1 75 FVCEICGKGFQRDQNLQLHRRGH 97 89*******************88 PP
2	zf-C2H2	12.1	0.00062	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + s+ k H +t+ XP_020687483.1 153 WKCEKCSKKYAVYSDWKAHVKTC 175 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MFPSATISNS TSISEDASVS TETKAHDHFN NLSQLFTPTS PHPKPKTKRS QAGNPDPEAE 60 VVALSPKSLL ATNRFVCEIC GKGFQRDQNL QLHRRGHNLP WRLRQRNNGK EAVKKRVYVC 120 PEASCVHHHP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK KYAVYSDWKA HVKTCGTREY 180 RCDCGTLFSR KDSFITHRAF CDALAEESAR LIANSDPATI NNTLSHPLLH NPLFPSFANS 240 WNPSYNSNPN FVAFLPMPNP NPNPNPNPTT SSFELNPGDS FQPFVNPYFS AHHLHPSAAA 300 ATQPPLSATA LLQRASNIGH MRLTDGGVDY DARAFSASQS ADRLTHDFLG VDSSDVAVEE 360 FLPLPGIGMD VVTTGPCVDN GGDGDHTKPI VGFSFPRVTG AWRDHRGVRD

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MFPSATISNS TSISEDASVS TETKAHDHFN NLSQLFTPTS PHPKPKTKRS QAGNPDPEAE  60
VVALSPKSLL ATNRFVCEIC GKGFQRDQNL QLHRRGHNLP WRLRQRNNGK EAVKKRVYVC  120
PEASCVHHHP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK KYAVYSDWKA HVKTCGTREY  180
RCDCGTLFSR KDSFITHRAF CDALAEESAR LIANSDPATI NNTLSHPLLH NPLFPSFANS  240
WNPSYNSNPN FVAFLPMPNP NPNPNPNPTT SSFELNPGDS FQPFVNPYFS AHHLHPSAAA  300
ATQPPLSATA LLQRASNIGH MRLTDGGVDY DARAFSASQS ADRLTHDFLG VDSSDVAVEE  360
FLPLPGIGMD VVTTGPCVDN GGDGDHTKPI VGFSFPRVTG AWRDHRGVRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	5e-94	C2H2 family protein