PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687528.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 558aa MW: 61580.8 Da PI: 7.4264

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687528.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	9e-13	409	455	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq XP_020687528.1 409 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 455 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
MKKDIVRRAF WSEEDRAMAV AVLGPQAFDY LTKSHPSSDG LITVIGNDAN LQNKLVDLVE 60 GPSGAGWSFA IFWQISRSKS GDVVLCWGDG HLREPHEGEE ELEAYASPAQ VAHQKKMKRV 120 LEKLHLVYGG SDDENYAVRL DRVTDAEMFF LASMYFAFPR GEGAPGRVLL AGNPAWASAT 180 NYCVRAFLAR AAGFQTIVLV PFATGVLELG SVNVIQESFE QLRIIRSLFF EGSTSGGVEN 240 KVGRPQFPHF GFIGRSEQSP IIFGNDLNIG RSEFSTGKIE ERPLVIRQSS TGLVGNRKAL 300 TWSMGRSFGS QQHKFGNAAI MVGGADQASG IKDDHRLPQI QPQKPLPPPT RQIDFSGGGS 360 SSVGRPGALD SELSDTEASC KEEKPSIIDK RRPRKRGRKP ANGREEPLNH VEAERQRREK 420 LNQRFYALRA VVPNISKMDK ASLLGDAIAY ITELQNKLKE IDSEKEPSLI DHKKWTPDVE 480 VETSHEEVIV RVSCPIDAHP VSRVIQALKE SQVSVMESKV STVDDKVLHT FVVKSLAGAE 540 QEMKEKLMTA ISQQMSSS

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

MKKDIVRRAF WSEEDRAMAV AVLGPQAFDY LTKSHPSSDG LITVIGNDAN LQNKLVDLVE  60
GPSGAGWSFA IFWQISRSKS GDVVLCWGDG HLREPHEGEE ELEAYASPAQ VAHQKKMKRV  120
LEKLHLVYGG SDDENYAVRL DRVTDAEMFF LASMYFAFPR GEGAPGRVLL AGNPAWASAT  180
NYCVRAFLAR AAGFQTIVLV PFATGVLELG SVNVIQESFE QLRIIRSLFF EGSTSGGVEN  240
KVGRPQFPHF GFIGRSEQSP IIFGNDLNIG RSEFSTGKIE ERPLVIRQSS TGLVGNRKAL  300
TWSMGRSFGS QQHKFGNAAI MVGGADQASG IKDDHRLPQI QPQKPLPPPT RQIDFSGGGS  360
SSVGRPGALD SELSDTEASC KEEKPSIIDK RRPRKRGRKP ANGREEPLNH VEAERQRREK  420
LNQRFYALRA VVPNISKMDK ASLLGDAIAY ITELQNKLKE IDSEKEPSLI DHKKWTPDVE  480
VETSHEEVIV RVSCPIDAHP VSRVIQALKE SQVSVMESKV STVDDKVLHT FVVKSLAGAE  540
QEMKEKLMTA ISQQMSSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	391	399	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	4e-70	bHLH family protein