PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687532.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MIKC_MADS

Protein Properties

Length: 253aa MW: 29139.1 Da PI: 7.9855

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687532.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.2	3.3e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+S+LCdaeva+iifs++gklyeys+ XP_020687532.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISILCDAEVALIIFSTKGKLYEYST 59 79***********************************************96 PP
2	K-box	91.5	1.5e-30	81	174	7	100
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++e + + +qe+ kLk++ie Lq++ hl+Ge+Le+LslkeLq+LeqqLe++lk+iRs++++lll++i elq+kek+l e+n L+kk+ e XP_020687532.1 81 QNTEPESQGDICQEYGKLKNKIEALQKSRSHLMGEKLETLSLKELQHLEQQLETALKHIRSQRTQLLLNSIAELQRKEKSLLEHNSLLEKKITE 174 44555667789********************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISILCD AEVALIIFST KGKLYEYSTD 60 SCMDRILEHY ERYCYAEKAL QNTEPESQGD ICQEYGKLKN KIEALQKSRS HLMGEKLETL 120 SLKELQHLEQ QLETALKHIR SQRTQLLLNS IAELQRKEKS LLEHNSLLEK KITENESTTA 180 MTQDTKRKQQ RQEQESSSPP PFINDIPTLN LGTYPVSHGE EVAEPPLTRV NSNSLPPWML 240 RSITLEDNES YAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	1e-67	MIKC_MADS family protein