PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687610.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

YABBY

Protein Properties

Length: 114aa MW: 12867.9 Da PI: 9.1813

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687610.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	60.1	9.2e-19	1	64	1	64
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshld 64 +d++ss e++Cyv+C++C+t+lav vP + l+ +vtv+CGhC +l +n + q+ + ++l+ XP_020687610.1 1 MDLVSSREHLCYVRCAYCSTVLAVGVPCKRLMDTVTVKCGHCNHLSFLNPRRLLQAHYSDHQLG 64 578999*************************************998888877777777766654 PP
2	YABBY	32.3	3.2e-10	81	113	101	133
YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfi 133 s+ + e++p++p v++PPek+ r Psaynrf+ XP_020687610.1 81 SSSTSMEQAPKAPFVVKPPEKKHRLPSAYNRFM 113 366778999***********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence
MDLVSSREHL CYVRCAYCST VLAVGVPCKR LMDTVTVKCG HCNHLSFLNP RRLLQAHYSD 60 HQLGFQDPCN DCRKGQLSAA SSSTSMEQAP KAPFVVKPPE KKHRLPSAYN RFMR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	3e-32	YABBY family protein