PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687633.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 196aa MW: 21874.3 Da PI: 5.9514

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687633.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.6	4e-31	112	169	1	58
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDg++WrKYG+K vk+s++pr+YYrC+s+gC+vkk+ver+++d ++v+++Yeg+Hnh XP_020687633.1 112 LDDGFKWRKYGKKAVKNSPNPRNYYRCSSPGCEVKKRVERDRSDSSYVITIYEGTHNH 169 59******************************************************** PP

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence
MAALLEPAEM NSHFSSLQPA KLLHSSCEGS LAATGGGGGS GDVFDFAQID QSQFFDGSCL 60 TEVAGELETP TSRMMESSDL YEHEMEYEEL KRRKAEGGCR IGFRTKSEVE ILDDGFKWRK 120 YGKKAVKNSP NPRNYYRCSS PGCEVKKRVE RDRSDSSYVI TIYEGTHNHI SPDCKPYTTN 180 PPQLAIAPSH SWSQQF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	127	KRRKAEGGCRIGFRTKSEVEILDDGFKWRKYGKKAVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	2e-38	WRKY family protein