PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020687662.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 256aa MW: 27810.8 Da PI: 7.9482

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020687662.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	105	127	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ Cgk+F++ L H +H XP_020687662.1 105 YICKSCGKCFPSFQALGGHRASH 127 89**********99999998887 PP
2	zf-C2H2	14.7	9e-05	165	187	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H XP_020687662.1 165 HQCSICGAEFSSGQALGGHMRRH 187 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MEGIMEDLPM VKRKRTKRQW LKLPLAEAAP VAAAAVSYTS TSAEFSDCVT EEDEEMAKCL 60 MLLAQGDQRP DLDITEDPTT SMKSDSKRFV EAPTTTGGRA GIYIYICKSC GKCFPSFQAL 120 GGHRASHKKP KLVVNATKTV VMDEDSIQLS MNSFPSKVAA KARTHQCSIC GAEFSSGQAL 180 GGHMRRHRPA NLPEPAKKER NSNGLSLDLN LPAPCDEDVN PAKSPSSVSA TKTPPFSFES 240 RAPILLLTSA IFDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	4e-44	C2H2 family protein