PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020687696.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 25459.7 Da    PI: 7.0466
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020687696.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.59.8e-25959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien + rqvt+skRr gi+KKAeEL vLCda+v++ +fss+gkl  y+s
  XP_020687696.1  9 KKIENPTSRQVTYSKRRVGIMKKAEELTVLCDAQVSLFMFSSSGKLSGYCS 59
                    68*********************************************9986 PP
2K-box87.42.8e-2971169199
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yq+ +g + +ea+++++q+ l++Lk+ ++nLq+e+R+++Ge+Le L+++eL+ Leq+Le+s+k +R++K++++ +q+++ +kk ++++e+ +aL 
  XP_020687696.1  71 YQQVTGIDIWEAEYQRMQNTLRNLKEINDNLQKEIRQRKGENLEGLDVNELRGLEQNLEESIKIVRERKYHVIATQTDTYKKKLRNTREIYTALL 165
                     78899999************************************************************************************999 PP

           K-box  96 kkle 99 
                     ++l 
  XP_020687696.1 166 HELH 169
                     9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MGRGKIEIKK IENPTSRQVT YSKRRVGIMK KAEELTVLCD AQVSLFMFSS SGKLSGYCSP  60
STEIKDIFER YQQVTGIDIW EAEYQRMQNT LRNLKEINDN LQKEIRQRKG ENLEGLDVNE  120
LRGLEQNLEE SIKIVRERKY HVIATQTDTY KKKLRNTREI YTALLHELHE FEDENQRCSF  180
VAEDLSGVYD STISMANQQH SQPNKQKIVY ESHDLSFA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.16e-62MIKC_MADS family protein