PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020687815.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ERF
Protein Properties Length: 233aa    MW: 26398.1 Da    PI: 10.1492
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020687815.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.61.1e-11109149350
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                      +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+
  XP_020687815.1 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAA 149
                     79**98..47*********4.....5********************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MVSIRRRRLL GLCSGKNSIP VELPGPIEGS NTVENLNKNV KPFSIHPMPS VASNHEKPVN  60
LSETSFGAST VSSFRSPKLE TNNYFPGKEI KRRRRHRRKY YEDQEPCIMR GVYFKNMKWQ  120
AAIKVDKKQI HLGTVGSQEE AARLYDRAAF LCGREPNFEL SEEEKKELSQ YKWDEFLAMT  180
RTAITSKKHQ RRAGVGRRKK LGIESQGSDM EPEKGAGGMS SMSDDGEMET AAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187201KKHQRRAGVGRRKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.22e-40ERF family protein