PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020687888.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 221aa    MW: 24557.4 Da    PI: 10.5014
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020687888.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-14107151347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_020687888.1 107 SWTEEEHRAFLAGLHKLGKGDWRGISRNFVTTRTPTQVASHAQKY 151
                      5*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MVRKCSHCGN NGHNSRTCSS SSSKYGGGLR LFGVQLQIAS SSSSSSSHLK RSFSLDCLST  60
TCYNSSHSPS SSSSSTSLVC IDEAAQKVST GYLSDCLRTQ ERKKGISWTE EEHRAFLAGL  120
HKLGKGDWRG ISRNFVTTRT PTQVASHAQK YFLRKNNLNN KKRRSSLFDV VGSCERQANV  180
RKFFNSKDHS LLKDANENSL TLNNQQCNLK PSQFSRIRGY I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-42MYB_related family protein