PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020687938.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARF
Protein Properties Length: 960aa    MW: 108132 Da    PI: 6.7699
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020687938.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.15.3e-21127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++       +++++ ++l  +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  XP_020687938.1 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfTLQPPT-QELGANDLHDIVWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 218
                     99*****************************9666665.49************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_020687938.1 219 SQLLLGIRRA 228
                     7789999997 PP
2Auxin_resp113.42.1e-37253334182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     aaha++++s+F+++YnPras+seFv++++k++k+++++vs+GmRf+m+fete++  rr++Gt++g+sdld ++W+ S+Wr++
  XP_020687938.1 253 AAHAVANSSPFTIFYNPRASPSEFVIPLAKYNKTFYMQVSLGMRFRMMFETEECGVRRYMGTITGISDLDATQWKTSQWRNI 334
                     79******************************************************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 960 aa     Download sequence    
MKVPPANGFP ANTSEGERKS MNSELWHACA GPLVSLPPAG SHVVYFPQGH SEQVAASMQK  60
KMDGIPTYPS LPSKLICVLQ NVTLHADTET DEVYAQMTLQ PVNKFDREAL LASEMGLEQN  120
KQPTQFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTL QPPTQELGAN DLHDIVWTFR  180
HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRDEKSQ LLLGIRRATR QQPTISSSVL  240
SSDSMHIGIL AAAAHAVANS SPFTIFYNPR ASPSEFVIPL AKYNKTFYMQ VSLGMRFRMM  300
FETEECGVRR YMGTITGISD LDATQWKTSQ WRNIEVGWDE LTAADRPSRV SLWEIEPVAT  360
PVYLSPPPFF RPKFPKQPGM PADDEAEAEI AFKSVIPCLG DDFGIKDTQS QLFPGLSLVQ  420
WMAIQQNSRL SSSTSQPTYI PSMEASIPSS LICNDPARLL SFQSHTSCFP NFQYGFKLNP  480
QSQQLDQHQK PKKQNSNEIQ FPPPQQLAES QTHLKQRKHD NQQQNLQQLN AQKQQNLTQA  540
LLLNEQLQPS AFQIQQQQVI QNQKSHSIQG KTLLNQTYLQ PQVLLQSNSN FQQPVELQQH  600
SLLQQQQQIE MQLIQKLQHQ QVLSQLSAQV QSQLSQQLPL QNQLFHQQQN FQQLPKNQIA  660
GHSNPQLLAR TPPPPSENDA PSCSTSPSSS CQVSMHGVPS KVLQELQNRH EMHVIKETNH  720
ILCHNSMRDQ LDSSSMNSFC LDGSLQEGFS HSPVCLDADL RHDSHSNLLT GTNSDILLQN  780
SMLSRGLGSG KDIQNFLPSY CNQRDVDTDS TAAVSSQSFC LQDMPFNPGW SADACFNEVG  840
MLNQEMWANQ PQRRRTYTKV HKRGSVGRSI DVSRYRGYDE LRHDLACMFG IEGQLEDPHR  900
TDWKVVYVDH ENDILLVGDD PWEEFVRCVQ SIKILSSLEV QQMSLAGDLP NVVMHNQSRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein