PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020687990.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family AP2
Protein Properties Length: 333aa    MW: 37914.7 Da    PI: 6.6378
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020687990.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.81.8e-1547106155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +  Aa+a++ a++k++g
  XP_020687990.1  47 SVYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEAAAARAYDLAALKYWG 106
                     78*******************999955656446**********99*************98 PP
2AP252.71.1e-16149200155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  XP_020687990.1 149 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDMAAIEYRG 200
                     89****99**********99966...3.6*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MAKKKPNSSA SNHESNETTR SESNNGVEKM KRTRKNVPRE TPSKRSSVYR GVTRHRWTGR  60
YEAHLWDKNC WNESQNKKGR QVYLGAYDDE AAAARAYDLA ALKYWGQETT LNFPLLNYQE  120
ELKAMAGQSK EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT  180
YATQEEAAAA YDMAAIEYRG LSAVTNFDLS RYVDFLRPNS EGNKSSNYET NLSIHKQEKQ  240
EEQQDQATSS STDLGFLLQS SKFEDMLKRT ITTEPPASPP ESEDKPSSRC SFPDDIQTYF  300
ECNDDGSFVE GDDTIFGEIN AFEAPIFPCE LDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.15e-94AP2 family protein