PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020688010.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

LBD

Protein Properties

Length: 196aa MW: 21757.9 Da PI: 6.498

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020688010.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.3	3.3e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++ +++a+pe++r+++++sl++eA+ r+ +Pv+Gavg+i+ +++l+q+ XP_020688010.1 2 SCNGCRVLRKGCSESCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMAFISAVPEQNRPALFQSLLFEACGRTINPVNGAVGLIRMRRWNLCQE 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_020688010.1 97 AVETVLR 103 *998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence
MSCNGCRVLR KGCSESCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMA FISAVPEQNR 60 PALFQSLLFE ACGRTINPVN GAVGLIRMRR WNLCQEAVET VLRGGTIRPI SDLAEDSAVD 120 DGEIDEKRPK TPLIGDRRSQ VNCDLELHLR LPLMEEKWRP GTPSKWRPGT PSMNSSTTGD 180 DDGFVDREQG LLNLFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	2e-72	LBD family protein