PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020688134.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 259aa MW: 27829.5 Da PI: 8.5694

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020688134.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	111	133	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+ksF + + L H+ +H XP_020688134.2 111 HPCSLCNKSFASYHALGGHMASH 133 78******************999 PP
2	zf-C2H2	11.9	0.00071	159	181	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k+F++ L H r+H XP_020688134.2 159 HQCLICFKTFPTGQALGGHKRRH 181 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MAINKPWRLL ISPSLSGAQI LAQEIFQIRP LCLPASKSMA VQATEPKSSD SPQSPARTES 60 NSGDCNQILQ FNRLTKRKRS KRQHELLESP SSDDDEYIAQ CLLMLSRTGG HPCSLCNKSF 120 ASYHALGGHM ASHRKSLSST ADDRLSAGPT ALVSGGRVHQ CLICFKTFPT GQALGGHKRR 180 HYDGTIGSAA GTGSGSEGAI GDCGRGLGFD LNLPAAEEFA GGVGWRCLEE EESRSSLPLK 240 KPCLASFSRF RVSIDFYGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	4e-27	C2H2 family protein