PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020688542.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 830aa MW: 93177.3 Da PI: 6.4681

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020688542.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	115.3	3.3e-36	142	218	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCead++++k yhrrh+vC +++a++v+++g+e+r+CqqC++fh l +fDe+krsCrr+L+khn+rrr+k XP_020688542.1 142 RCQVPGCEADIKDLKGYHRRHRVCLRCANASSVMLDGEEKRYCQQCGKFHVLLDFDEGKRSCRRKLEKHNRRRRRKP 218 6************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence
MDFPRPSPAE SSVPTEAVGI SDDLSASAVW DWGNLLDFAI ETDDSLILPW DAPDLSHPPY 60 MRPPLSDAET HADPTPVLLP PAGSSNRVRK RDPRLVCANY LAGRVPCACP ELDEKELEGD 120 EEEQVFGGRK RARAGVVNVG VRCQVPGCEA DIKDLKGYHR RHRVCLRCAN ASSVMLDGEE 180 KRYCQQCGKF HVLLDFDEGK RSCRRKLEKH NRRRRRKPTD SNNVVEKEKQ SQAEPPEDVF 240 LDTDQLQETL KGSASNAVDN GEISKVIDGE MFLDCENGNG FPGCSIISLE QAQTNSTPSF 300 AASVDACADD RIGHPKSAFS STICDNKTSY SSMCPTGRIS FKLYDWNPAE FPRRLRHQIF 360 QWLASMPVEL EGYIRPGCTI LTVFIAMPQH MWDKLSQNGA LYIKQLINAP ESLLSGRGNV 420 LIYLSSMIVH VLKDGTSHIK MEVNAPRLHY VHPTYFEAGK AVEFIACGSN LDQPKLRFLV 480 SFGGKYLLCS AYRVISNEKV RCYGVNSVVS SSDCGHEMFR INIKQTTPEV FGPAFIEVEN 540 ESGISNFIPI LIGDKQLCSE LKNFHGALTY YPNAREDNSV SNAVFDNAVF SKVNVTKQID 600 MSDLLVDIAW LLNEPCKDYN KSFLGSLNVQ RLKYILQFSM QNELISVLKV ILKNASIMIY 660 EVGFQKSENL TVSSDFGELL EYMKIAREFL NQRIQHKERT ILNAGRSNFL ETLPINHVEN 720 ADLAEERRRN GHALVSTATM LSVDGDESNP LLPKDTTCSM MSFLHLHSYW PSKYWMTKMF 780 SPPITTRLPA LFVMGSFVMC FVVCIILLDP HKASDFAVFM GRYSLRISNQ

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence

MDFPRPSPAE SSVPTEAVGI SDDLSASAVW DWGNLLDFAI ETDDSLILPW DAPDLSHPPY  60
MRPPLSDAET HADPTPVLLP PAGSSNRVRK RDPRLVCANY LAGRVPCACP ELDEKELEGD  120
EEEQVFGGRK RARAGVVNVG VRCQVPGCEA DIKDLKGYHR RHRVCLRCAN ASSVMLDGEE  180
KRYCQQCGKF HVLLDFDEGK RSCRRKLEKH NRRRRRKPTD SNNVVEKEKQ SQAEPPEDVF  240
LDTDQLQETL KGSASNAVDN GEISKVIDGE MFLDCENGNG FPGCSIISLE QAQTNSTPSF  300
AASVDACADD RIGHPKSAFS STICDNKTSY SSMCPTGRIS FKLYDWNPAE FPRRLRHQIF  360
QWLASMPVEL EGYIRPGCTI LTVFIAMPQH MWDKLSQNGA LYIKQLINAP ESLLSGRGNV  420
LIYLSSMIVH VLKDGTSHIK MEVNAPRLHY VHPTYFEAGK AVEFIACGSN LDQPKLRFLV  480
SFGGKYLLCS AYRVISNEKV RCYGVNSVVS SSDCGHEMFR INIKQTTPEV FGPAFIEVEN  540
ESGISNFIPI LIGDKQLCSE LKNFHGALTY YPNAREDNSV SNAVFDNAVF SKVNVTKQID  600
MSDLLVDIAW LLNEPCKDYN KSFLGSLNVQ RLKYILQFSM QNELISVLKV ILKNASIMIY  660
EVGFQKSENL TVSSDFGELL EYMKIAREFL NQRIQHKERT ILNAGRSNFL ETLPINHVEN  720
ADLAEERRRN GHALVSTATM LSVDGDESNP LLPKDTTCSM MSFLHLHSYW PSKYWMTKMF  780
SPPITTRLPA LFVMGSFVMC FVVCIILLDP HKASDFAVFM GRYSLRISNQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	134	GRKRARA
2	200	218	KRSCRRKLEKHNRRRRRKP
3	204	216	RRKLEKHNRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	1e-165	SBP family protein