PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020688583.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family FAR1
Protein Properties Length: 241aa    MW: 28052.6 Da    PI: 6.5171
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020688583.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.61.9e-2271157289
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                      Y++Y++++GFsv k+++++  ++++ ++++fvCsk g+++  + +  +++ +r+ trtgC a+++ + ++ g w+v+k+ ++HnH+l
  XP_020688583.2  71 AYRSYGYNLGFSVHKDHHSYWPNSRNLKSKDFVCSKAGFKKLPDLN-IQRKYRRSDTRTGCPAMVRFTVDEAGYWKVKKFIENHNHDL 157
                     59*****************************************999.999999*********************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MPMKMEIDLE EDVGFYEQTI FSQVSEEADN LENADVPETS AHEAEHVEPV GLDEKFSISD  60
VYVNEKEAYE AYRSYGYNLG FSVHKDHHSY WPNSRNLKSK DFVCSKAGFK KLPDLNIQRK  120
YRRSDTRTGC PAMVRFTVDE AGYWKVKKFI ENHNHDLPRP EDRHLLRSCR NMCDEKASVL  180
KAMTDAGIRT IDAFSFLADK VRGVENIGFT RRDAYNFIQK IKRAKIELGN TYTLIELFKE  240
R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-20FAR1 family protein