PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020688622.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 327aa MW: 37236.8 Da PI: 9.1503

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020688622.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.6e-17	74	119	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+++ gR++k+c++rw++ XP_020688622.1 74 RGHWRPTEDTKLKELVEQFGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 119 899***************************.*********996 PP
2	Myb_DNA-binding	50	6.9e-16	126	169	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++T+eE+e+l+ + + +G++ W++Iar ++ gRt++ +k+ w+ XP_020688622.1 126 RKAFTAEEEERLLSVQHHYGNK-WSLIARFFP-GRTDNAVKNQWHV 169 789*****************.*****.*********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MSLWQQRSEA PMLLLSSPQS QPSFFTSSVP PLEREFMRSE EGWSFSNSHD DLQVSDGSME 60 SRDLETKHAK LCTRGHWRPT EDTKLKELVE QFGPQNWNLI AEKLEGRSGK SCRLRWFNQL 120 DPRINRKAFT AEEEERLLSV QHHYGNKWSL IARFFPGRTD NAVKNQWHVI MARKQRENSI 180 SYRRRRIASS TSFNPSIHLR TLEHNTSSAE STITSTREES VSTATTRTVH GLVLSPQQKK 240 ANFFIMGGKS SVDQIALSDS TSKASATESV VIRGAELERG RINLPFFDFL GVGAAEEKPL 300 MVIRMGSEKA DYQQKICFDG DFSPAYV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17800.1	2e-62	MYB family protein