PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020688860.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CPP

Protein Properties

Length: 558aa MW: 60490.2 Da PI: 7.3904

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020688860.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	42.5	1.3e-13	93	132	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 +kk+CnCk+s+Clk+YCeCfa+g++C+ C+C +C+N+ e+ XP_020688860.1 93 RKKNCNCKHSRCLKLYCECFASGVFCDG-CNCANCCNNVEN 132 689***********************.******9875 PP
2	TCR	51.1	2.6e-16	177	216	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e XP_020688860.1 177 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFE 216 589***********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
MEQGIQSASP AASDLPPKKL VRQLDFTTAY CGVPAVGAGT LPYEHQQLPP LQKQMHASPL 60 PTPRPSIPMS IKPESPKGRS RPLFEMKEGT PTRKKNCNCK HSRCLKLYCE CFASGVFCDG 120 CNCANCCNNV ENEATRHEAV EATLERNPNA FRPKIGNSPH SIRDSKEDVV ETTLVGKHNK 180 GCHCKKSGCL KKYCECFQAN ILCSENCKCI DCKNFEGSEE RKALHHGDHG NALTYMQQAA 240 NAALNGAIGP SGYFSPASKK RKNQDLFFGT SVKDQSIHSP VQYPNAGHVK NSGPSSLASV 300 PTARAANPAS LGSAKATYRP LLADIVHTED VKELCRILAV VSGEAVKTAA DKSVQGEKHL 360 EMEEQAESSL ALSSNDKIET PARPPDPPKI SVDDQSNGTD KMTEESGSDF ADGQRVRRPM 420 SPGTLALMCD EQDMMCVSSQ NNNLPPILPN NQRMTEMYAE QEKCVLMAFR ESLLKLINCG 480 TAKEAKFSSM SSKAETSSHE DPVCNSISRI SASANAQVSQ TVNSFPASSN SHFPVARTQT 540 LENGDLKPTV ESSDHVDK

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

MEQGIQSASP AASDLPPKKL VRQLDFTTAY CGVPAVGAGT LPYEHQQLPP LQKQMHASPL  60
PTPRPSIPMS IKPESPKGRS RPLFEMKEGT PTRKKNCNCK HSRCLKLYCE CFASGVFCDG  120
CNCANCCNNV ENEATRHEAV EATLERNPNA FRPKIGNSPH SIRDSKEDVV ETTLVGKHNK  180
GCHCKKSGCL KKYCECFQAN ILCSENCKCI DCKNFEGSEE RKALHHGDHG NALTYMQQAA  240
NAALNGAIGP SGYFSPASKK RKNQDLFFGT SVKDQSIHSP VQYPNAGHVK NSGPSSLASV  300
PTARAANPAS LGSAKATYRP LLADIVHTED VKELCRILAV VSGEAVKTAA DKSVQGEKHL  360
EMEEQAESSL ALSSNDKIET PARPPDPPKI SVDDQSNGTD KMTEESGSDF ADGQRVRRPM  420
SPGTLALMCD EQDMMCVSSQ NNNLPPILPN NQRMTEMYAE QEKCVLMAFR ESLLKLINCG  480
TAKEAKFSSM SSKAETSSHE DPVCNSISRI SASANAQVSQ TVNSFPASSN SHFPVARTQT  540
LENGDLKPTV ESSDHVDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-135	CPP family protein