PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020688973.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 222aa MW: 25785.2 Da PI: 6.9242

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020688973.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.2e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+d++ q+G g+W++I+++ g+ R +k+c++rw +yl XP_020688973.1 15 KGLWSPEEDQKLKDYILQYGHGCWSSIPAKAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP
2	Myb_DNA-binding	58.3	1.8e-18	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T eE+e++ ++++lG++ W++Ia++++ gRt++++k++w++yl XP_020688973.1 68 RGIFTSEEEEIIMSLHAKLGNK-WSRIAAHLP-GRTDNEIKNYWNSYL 113 7889****************.*****.***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MRLRTCEKQK VNYRKGLWSP EEDQKLKDYI LQYGHGCWSS IPAKAGLQRN GKSCRLRWIN 60 YLRPGLKRGI FTSEEEEIIM SLHAKLGNKW SRIAAHLPGR TDNEIKNYWN SYLKKKVLQL 120 NHQNTIISSK ELINTSMNQT FNSENFQLES INQISTSSAC SINDNGSFKS SFPKVLFEEW 180 LSPQDMGGRE EFDDNGLFEE MQSLDMLGEM IGDIDMSYDF IY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48920.1	7e-63	MYB family protein