PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020689350.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 471aa MW: 54428.6 Da PI: 6.7713

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020689350.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.5e-31	95	148	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ XP_020689350.1 95 PRLRWTPELHLSFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 148 8****************************************************7 PP
2	Myb_DNA-binding	50.1	6.2e-16	96	147	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e+++ +v+av++lGg t+k++ ++m+ g++ ++ks++q+y+ XP_020689350.1 96 RLRWTPELHLSFVHAVERLGGQeraTPKLVLQMMNvRGLSIAHVKSHLQMYR 147 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MDEEKGKDVV EIYDEETLEL RLPTKPLDLN EEVNEEKEKE EEEDKGSSSE VMGESDHGSS 60 NGEGGRGSSE SKGDEEGRRE QLGPTVRQYV RSKMPRLRWT PELHLSFVHA VERLGGQERA 120 TPKLVLQMMN VRGLSIAHVK SHLQMYRSKK LDDSGQERSN ISSALSPFDA HMRRDRFHEM 180 FYQRPGSYQP FRMERGGFFR AGNIHEDDWF YKVLQKSQSQ QPISDFKNTS FSRNQEWVFN 240 QHIAARANTI KEQDHANGLL HGMIFKKEGK TAASHLFDVR DVLTVNEISR KPYKLQEERQ 300 WQLGRSTYHN ENSISSSMSN SNFGKRVNNY IINQSSLRDP FAFKSRQETQ NFQSPIHQAE 360 LRKQEVLERE EPLRDTKRTR LIKEENEKMP DLQLSLSTSS MENGFDAKRS SETGVDSELS 420 LSLTPTISTE NKKIFKMQDK IMNSEIDFFK LSSSNKSNLR ISTLDLTMSI N

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MDEEKGKDVV EIYDEETLEL RLPTKPLDLN EEVNEEKEKE EEEDKGSSSE VMGESDHGSS  60
NGEGGRGSSE SKGDEEGRRE QLGPTVRQYV RSKMPRLRWT PELHLSFVHA VERLGGQERA  120
TPKLVLQMMN VRGLSIAHVK SHLQMYRSKK LDDSGQERSN ISSALSPFDA HMRRDRFHEM  180
FYQRPGSYQP FRMERGGFFR AGNIHEDDWF YKVLQKSQSQ QPISDFKNTS FSRNQEWVFN  240
QHIAARANTI KEQDHANGLL HGMIFKKEGK TAASHLFDVR DVLTVNEISR KPYKLQEERQ  300
WQLGRSTYHN ENSISSSMSN SNFGKRVNNY IINQSSLRDP FAFKSRQETQ NFQSPIHQAE  360
LRKQEVLERE EPLRDTKRTR LIKEENEKMP DLQLSLSTSS MENGFDAKRS SETGVDSELS  420
LSLTPTISTE NKKIFKMQDK IMNSEIDFFK LSSSNKSNLR ISTLDLTMSI N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-36	G2-like family protein